Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0111
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    27   3.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.3  

>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 599 RKKGPYFSFPITLCFNRDNS 658
           ++ GPYFSFP+    + DN+
Sbjct: 98  KRFGPYFSFPVVAGVSNDNT 117


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 563 CPIQVSIFKFIVRKKGPYFSFPITLCFNRDNSFPVHTT 676
           C        F VR+ G Y      LCF  + +FP+ +T
Sbjct: 321 CVFLYKAMDFFVREYGSYPFNSFKLCFVDETNFPIIST 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,215
Number of Sequences: 5004
Number of extensions: 60257
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)