Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0111
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1138 - 9429447-9433868                                           33   0.30 
06_01_1058 - 8502401-8502586,8502857-8502917,8503262-8503447,850...    29   4.9  
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675...    28   8.6  

>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 287 CFFFVRETHFEMSRHMGTELGNYKCFSHSADVSNDYH 177
           C+   R  H   S H+G E G ++ +S+ +DV N+ H
Sbjct: 280 CYILHRCQHQGTSDHVGGEYGRWQAYSYRSDVYNEIH 316


>06_01_1058 -
           8502401-8502586,8502857-8502917,8503262-8503447,
           8503531-8503720,8503861-8504212
          Length = 324

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = -1

Query: 712 GRNTREYS*YNRGCMHRKRVIPIEAQSYWE*EIRAFFSYNKFKNGYLYRTWEKILAAFER 533
           G+  +E + Y +G +H++++I + A +Y          Y KFK G   RT EK+L     
Sbjct: 220 GKTPKEIAEYKKG-LHKEKLITV-AYTY---------QYYKFKGGEQTRTREKLLLPRLE 268

Query: 532 EQDISTPQYV*N--KLLESFI*YQCCYHK 452
            Q       + N  + L  FI ++CC+ K
Sbjct: 269 RQTSFDDTCITNVQRDLCHFIYHECCHVK 297


>03_02_0244 +
           6750973-6751041,6751216-6751258,6751349-6751410,
           6751779-6751875,6752380-6752450,6752503-6752586,
           6753040-6753294
          Length = 226

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 169 LLNERMAHQQPQTKTDSERV*PLSASLLKELLNRIFE 59
           L  E + H QP T+ D     PLS      +++R FE
Sbjct: 142 LAGETVKHNQPHTEVDFRAFQPLSRESFTHVMDRNFE 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,756
Number of Sequences: 37544
Number of extensions: 310586
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)