Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0110
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 337 4e-93
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 45 4e-05
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 45 4e-05
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.17
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 29 2.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.8
U23526-5|AAB36850.1| 391|Caenorhabditis elegans Acyltransferase... 28 4.8
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr... 28 4.8
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 28 4.8
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 4.8
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 28 4.8
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 4.8
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 6.3
L12018-10|AAA65466.2| 683|Caenorhabditis elegans Dumpy : shorte... 28 6.3
L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 28 6.3
Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z77666-3|CAB01225.1| 698|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 27 8.4
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 337 bits (828), Expect = 4e-93
Identities = 151/210 (71%), Positives = 181/210 (86%)
Frame = +1
Query: 1 FRAFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEI 180
FRAFELLR+G DR++YLLVKEAKIIAMTCTHAAL+R+ELV++GF+YDNI+MEE+AQILE+
Sbjct: 1013 FRAFELLRNGRDRTEYLLVKEAKIIAMTCTHAALRRNELVKLGFRYDNIVMEEAAQILEV 1072
Query: 181 ETFIPLLLQNPQDGRSRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPY 360
ETFIPLLLQNPQDG +RLKRWIMIGDHHQLPPVV+N AFQKY NMEQSLF R+VRL VP
Sbjct: 1073 ETFIPLLLQNPQDGHNRLKRWIMIGDHHQLPPVVQNQAFQKYSNMEQSLFARLVRLSVPN 1132
Query: 361 VELDAQGRARPSICNLYRWRYRALGDLCHVTQLPEYRAANAGLRHDFQLVNVDDFNGFGE 540
V+LD QGRAR I LY+WRY LG+L HV LP+++ ANAG FQ +++ DFNG GE
Sbjct: 1133 VQLDRQGRARAQIAELYQWRYNGLGNLPHVDGLPQFQNANAGFAFPFQFIDIPDFNGHGE 1192
Query: 541 TEPSPYFYQNLAEAEYVVAVFMYMRLIGWP 630
T+PSP+FYQNL EAEY A++ YMR++G+P
Sbjct: 1193 TQPSPHFYQNLGEAEYACALYTYMRILGYP 1222
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 45.2 bits (102), Expect = 4e-05
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Frame = +1
Query: 52 LVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQDGRSR 231
L+ A +I TC+ AA R ++ +L++ES Q E E + ++
Sbjct: 580 LLAAADVICCTCSSAADARLSKIRTR----TVLIDESTQATEPEILVSIM--------RG 627
Query: 232 LKRWIMIGDHHQLPPVV--KNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARP 393
+++ +++GDH QL PVV K A + QSLF R+V LG+ L Q R P
Sbjct: 628 VRQLVLVGDHCQLGPVVICKKAAI---AGLSQSLFERLVLLGIRPFRLQVQYRMHP 680
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 45.2 bits (102), Expect = 4e-05
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Frame = +1
Query: 52 LVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQDGRSR 231
L+ A +I TC+ AA R ++ +L++ES Q E E + ++
Sbjct: 580 LLAAADVICCTCSSAADARLSKIRTR----TVLIDESTQATEPEILVSIM--------RG 627
Query: 232 LKRWIMIGDHHQLPPVV--KNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARP 393
+++ +++GDH QL PVV K A + QSLF R+V LG+ L Q R P
Sbjct: 628 VRQLVLVGDHCQLGPVVICKKAAI---AGLSQSLFERLVLLGIRPFRLQVQYRMHP 680
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 41.9 bits (94), Expect = 4e-04
Identities = 34/131 (25%), Positives = 62/131 (47%)
Frame = +1
Query: 7 AFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIET 186
A E ++ +R +++ II T T + R L ++G + +++EE+A++LE
Sbjct: 1189 ACENFKNAQNRVDAEIMRMTMIIGATTTGCSRLRPTLEKVGPRI--LIVEEAAEVLEAHI 1246
Query: 187 FIPLLLQNPQDGRSRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYVE 366
++ S ++ +MIGDH QL P + S+F R+V G+P+ +
Sbjct: 1247 ISAMI--------STVEHVVMIGDHKQLRPNPAVHELGVAYGLRISMFERLVERGLPFSQ 1298
Query: 367 LDAQGRARPSI 399
L Q R +I
Sbjct: 1299 LRQQHRMNLTI 1309
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/95 (28%), Positives = 33/95 (34%)
Frame = +3
Query: 189 HTAAAAESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVRGT 368
H A+ A + G P H +PPPA P +H P + PV GQ G V
Sbjct: 58 HAASIAHTYGGYPPPYPYQHPHQPPPAHPHHLQH--PHPYAYPGYPV--PGQEGHQVPAP 113
Query: 369 GRTGSS*TQHLQPVPLALPGAGRPVPRDAAPGVPR 473
+ P P G P P VPR
Sbjct: 114 QHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPR 148
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 252 RRPPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVR 362
R PP +PGR E PE ++GT Q CS R
Sbjct: 75 REPPMRSPGRNEVMSPE-RRYGTRSASSRSQNECSCR 110
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 87 ARHRDYFRFFDQQVLGPIQSGP 22
ARH+D F D+ +LGP+ + P
Sbjct: 634 ARHQDNFALCDRSILGPVTTSP 655
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 PPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVR-GTGRTGSS*TQHLQPVPLALPGAG 434
PP P RQ+ PE G+ P + TG R G G++ SS ++ P P G
Sbjct: 436 PPTGLPSRQKRQAPEDRPTGSPPT-GSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTG 494
Query: 435 RPVPRDAAPGVPRRQ 479
P G P ++
Sbjct: 495 SPPTGSPPTGAPPKK 509
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 PPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVR-GTGRTGSS*TQHLQPVPLALPGAG 434
PP P RQ+ PE G+ P + TG R G G++ SS ++ P P G
Sbjct: 457 PPTGLPSRQKRQAPEDRPTGSPPT-GSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTG 515
Query: 435 RPVPRDAAPGVPRRQ 479
P G P ++
Sbjct: 516 SPPTGSPPTGAPPKK 530
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 PPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVR-GTGRTGSS*TQHLQPVPLALPGAG 434
PP P RQ+ PE G+ P + TG R G G++ SS ++ P P G
Sbjct: 442 PPTGLPSRQKRQAPEDRPTGSPPT-GSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTG 500
Query: 435 RPVPRDAAPGVPRRQ 479
P G P ++
Sbjct: 501 SPPTGSPPTGAPPKK 515
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +2
Query: 320 RACSPEWSDWVFRTWNWTHRVELDPASATCTAGATGRWATCAT*RSSRSTAPPTRAC 490
R C+ + F W+ E SATC G R +C + A TR C
Sbjct: 890 RTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRERSCRRGSCTEDDASQTRRC 946
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +2
Query: 320 RACSPEWSDWVFRTWNWTHRVELDPASATCTAGATGRWATCAT*RSSRSTAPPTRAC 490
R C+ + F W+ E SATC G R +C + A TR C
Sbjct: 890 RTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRERSCRRGSCTEDDASQTRRC 946
>U23526-5|AAB36850.1| 391|Caenorhabditis elegans
Acyltransferase-like protein 12 protein.
Length = 391
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 359 YGTPSLTILVNRLCSMLQYFWNAMFLTTGGS 267
+ TP L ++LC+M+ WNA+ + G +
Sbjct: 72 FSTPLFNYLEHKLCAMVNAHWNAVSVFVGAT 102
>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
protein C34E10.8 protein.
Length = 1024
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/78 (24%), Positives = 29/78 (37%)
Frame = +3
Query: 102 QTFRISANGFQIRQHTDGGISSNPRDRDVHTAAAAESAGRQVPAEALDHDRRPPPAAPGR 281
QTFR A+ I H NP D A ++ AG++ P +P R
Sbjct: 611 QTFRSQASRLPIAPHRAIAAGLNPADVGTRPAYRSQMAGQRPGMTPSAQQGSPQLISPPR 670
Query: 282 QEHGVPEVLQHGTEPVHQ 335
Q +P + + V +
Sbjct: 671 QGSMMPVAMNQSPQAVRR 688
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +3
Query: 156 GISSNPR-DRDVHTAAAAESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVH 332
G+ + P D + H A G++V A PPP AP V + P H
Sbjct: 330 GLQAGPSIDVESHFTYAQTQNGQKVLARTQSTSTSPPPQAPASAFEPVKPLSNGSPSPTH 389
Query: 333 Q 335
Q
Sbjct: 390 Q 390
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.3 bits (60), Expect = 4.8
Identities = 29/83 (34%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = +3
Query: 261 PPAAPG-RQEHGVPEVLQHGTEPVHQNGQTGCSVR---GTGRTGSS*TQHL-QPVPLALP 425
PP PG R E G+P + GQ G R TGR G T P P P
Sbjct: 96 PPGQPGARGEAGLPGIA----------GQPGSGARINPATGRPGFCITCPAGAPGPAGPP 145
Query: 426 GAGRPVPRDAAPGVPRRQ--RGP 488
GA P + PG P + RGP
Sbjct: 146 GAPGPKGNNGQPGAPAQSGGRGP 168
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +3
Query: 156 GISSNPR-DRDVHTAAAAESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVH 332
G+ + P D + H A G++V A PPP AP V + P H
Sbjct: 330 GLQAGPSIDVESHFTYAQTQNGQKVLARTQSTSTSPPPQAPASAFEPVKPLSNGSPSPTH 389
Query: 333 Q 335
Q
Sbjct: 390 Q 390
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +2
Query: 320 RACSPEWSDWVFRTWNWTHRVELDPASATCTAGATGRWATCAT*RSSRSTAPPTRAC 490
R C+ + F W+ E SATC G R +C + A TR C
Sbjct: 890 RTCNQQQCPSAFSLSVWSEWGEWTTCSATCGEGLQSRERSCRRGSCTEDDASQTRRC 946
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 6.3
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Frame = +3
Query: 48 PVGQRSENNRDDVHARRPQTFRISANGFQIRQHTDGGISSNPRDRDVH--------TAAA 203
P + +E + DD RR Q + +R+ T G S R R H + A
Sbjct: 265 PSSEENEEDEDDGAIRRGQRRAVP-----LRRGTTSGPPSRLRGRMSHPMGPPRRSSGAP 319
Query: 204 AESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVRGTGRTGS 383
SA + P E+ PPP++ R+++ H+ G +RG R G
Sbjct: 320 PSSASNRRPVESSSRGPPPPPSSSSRRDYSHQGDRNDDRFENHRRG----VIRGASRGGG 375
Query: 384 S*TQ 395
+ T+
Sbjct: 376 TVTR 379
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 6.3
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Frame = +3
Query: 48 PVGQRSENNRDDVHARRPQTFRISANGFQIRQHTDGGISSNPRDRDVH--------TAAA 203
P + +E + DD RR Q + +R+ T G S R R H + A
Sbjct: 265 PSSEENEEDEDDGAIRRGQRRAVP-----LRRGTTSGPPSRLRGRMSHPMGPPRRSSGAP 319
Query: 204 AESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVRGTGRTGS 383
SA + P E+ PPP++ R+++ H+ G +RG R G
Sbjct: 320 PSSASNRRPVESSSRGPPPPPSSSSRRDYSHQGDRNDDRFENHRRG----VIRGASRGGG 375
Query: 384 S*TQ 395
+ T+
Sbjct: 376 TVTR 379
>L12018-10|AAA65466.2| 683|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 19 protein.
Length = 683
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 146 MLSYLKPICTNSERLRAACVHVIAIIFASLT 54
M+ Y+ P+ +N + R A V +AIIFAS+T
Sbjct: 328 MIIYISPLLSNL-KFRPAYVLFLAIIFASIT 357
>L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical
protein F42H10.5 protein.
Length = 810
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 545 SVSPKPLKSSTLTSWKSCRRPALAARYSGSCVTWHRSPSA 426
S P P++S+ + + + A +SG +WHR+P+A
Sbjct: 4 SSPPTPIQSAGIPGALAVAQSPAAQLFSGDDWSWHRNPAA 43
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 469 GTPGAASRGTGRPAPGSASG 410
G PG RG G P PG+A G
Sbjct: 249 GLPGGLPRGGGPPLPGAAQG 268
>Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical
protein M01E5.3c protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +3
Query: 51 VGQRSENNRDDVHARRPQTFRISANGFQIRQHTDGGISSNPRDRDVHTAAAAESAGR--- 221
+G+RS NR T R S NG +I ++ + A AA +AG
Sbjct: 159 IGRRSSGNR---------TRRASRNGQEIVNPAIAPGAAAAAQPALEAAPAAPAAGAAAP 209
Query: 222 --QVPAEALDHDRRPPPAAPGRQEHGVPEVLQHG 317
P A RRP P P + H +P++L G
Sbjct: 210 EANAPQAAPPGIRRPIPLNPDQARHIIPQLLNPG 243
>Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical
protein M01E5.3b protein.
Length = 556
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +3
Query: 51 VGQRSENNRDDVHARRPQTFRISANGFQIRQHTDGGISSNPRDRDVHTAAAAESAGR--- 221
+G+RS NR T R S NG +I ++ + A AA +AG
Sbjct: 159 IGRRSSGNR---------TRRASRNGQEIVNPAIAPGAAAAAQPALEAAPAAPAAGAAAP 209
Query: 222 --QVPAEALDHDRRPPPAAPGRQEHGVPEVLQHG 317
P A RRP P P + H +P++L G
Sbjct: 210 EANAPQAAPPGIRRPIPLNPDQARHIIPQLLNPG 243
>Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical
protein M01E5.3a protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +3
Query: 51 VGQRSENNRDDVHARRPQTFRISANGFQIRQHTDGGISSNPRDRDVHTAAAAESAGR--- 221
+G+RS NR T R S NG +I ++ + A AA +AG
Sbjct: 159 IGRRSSGNR---------TRRASRNGQEIVNPAIAPGAAAAAQPALEAAPAAPAAGAAAP 209
Query: 222 --QVPAEALDHDRRPPPAAPGRQEHGVPEVLQHG 317
P A RRP P P + H +P++L G
Sbjct: 210 EANAPQAAPPGIRRPIPLNPDQARHIIPQLLNPG 243
>Z77666-3|CAB01225.1| 698|Caenorhabditis elegans Hypothetical
protein K08E7.3 protein.
Length = 698
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 251 IMIQRFSRDLPSCGFCSS 198
+M+ FSRDLP+CG +S
Sbjct: 493 LMVDGFSRDLPACGIRAS 510
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/94 (26%), Positives = 33/94 (35%)
Frame = +3
Query: 189 HTAAAAESAGRQVPAEALDHDRRPPPAAPGRQEHGVPEVLQHGTEPVHQNGQTGCSVRGT 368
H A +A PA + +PP +P Q P + H P +
Sbjct: 83 HAAPNYPTAASAFPAHSAGFSHQPPSFSPATQ----PSMNGHHAPPPPAVSRPPAFPTPP 138
Query: 369 GRTGSS*TQHLQPVPLALPGAGRPVPRDAAPGVP 470
GS+ P+P AL A RP P AA P
Sbjct: 139 PSVGSAAPSIQPPIPSALASA-RPAPFPAAQPPP 171
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 488 RPALAARYSGSCVTWHRSP 432
RPA+ + Y+G WHRSP
Sbjct: 178 RPAIGSGYTGGRNGWHRSP 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,765
Number of Sequences: 27780
Number of extensions: 318757
Number of successful extensions: 1298
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -