Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0109
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...   348   5e-97
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     39   8e-04
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    37   0.003
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    32   0.095
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    31   0.17 
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    29   0.88 
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    28   1.5  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    28   1.5  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    27   3.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.7  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   8.2  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.2  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.2  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score =  348 bits (855), Expect = 5e-97
 Identities = 151/210 (71%), Positives = 188/210 (89%)
 Frame = +3

Query: 90  PTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKL 269
           P    F+D++LS+TQRKTPTV+   +KISRIRGFY RKVK+TQ    ++L  I+QEFPKL
Sbjct: 13  PDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSILQEFPKL 72

Query: 270 DDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRA 449
           +D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYRCKQLKRA
Sbjct: 73  NDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYRCKQLKRA 132

Query: 450 ALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRAD 629
           ALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+NK+TRA 
Sbjct: 133 ALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQ 192

Query: 630 VEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
           V+VQPYAFTTKSL+VGH DYKYLRWQVIDT
Sbjct: 193 VDVQPYAFTTKSLFVGHFDYKYLRWQVIDT 222


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 561 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
           T+   GFP+VGKS+ + ++T    E   Y FTT +   G   Y   + Q++D
Sbjct: 65  TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILD 116


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
           +   GFP+VGKS+ ++ IT+       Y FTT +   G  +Y     Q++D
Sbjct: 65  VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLD 115


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 570 ICGFPNVGKSSFINKITRADVEVQPYAFTT 659
           + G PN GKS+ +N +T +  +V  Y FTT
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTT 270


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 504 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTK 662
           L Q+ +  A L S D    ++ + GFPN GKSS IN + +  V  V P    TK
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETK 346


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 561 TIIICGFPNVGKSSFINKI 617
           T+ + G+PNVGKSS IN +
Sbjct: 271 TVGVIGYPNVGKSSVINAL 289


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 570 ICGFPNVGKSSFINKITRA 626
           I G PNVGKS+F   IT++
Sbjct: 25  IVGMPNVGKSTFFRAITKS 43


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 432 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG 578
           K LKR  LG  AT +   GAN+        H    P  DP  +T+++ G
Sbjct: 53  KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG 98


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 489 ANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKI 617
           A L  LE + +  A          T  + G+PNVGKSS IN +
Sbjct: 279 ATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINAL 321


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 191 KPTYS*YFIMLVNDCRSFPLCFR*N 117
           +PTY+ YFI L++D R    C+  N
Sbjct: 95  RPTYTHYFIRLLHDKRLLQKCYTQN 119


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 171 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 350
           +S IR    R+ K    +    LSR I +  KLD V PF   +M +L D+ +  + +  L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492

Query: 351 NTARHLIDNV 380
            T   L+ NV
Sbjct: 493 ITITRLVSNV 502


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 564 IIICGFPNVGKSSFINKITRAD 629
           ++ICG   VGKSS I+ + + D
Sbjct: 6   VVICGDQGVGKSSLISALIQED 27


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 576 GFPNVGKSSFINKITRADVEVQPYAFTT 659
           G P+ GKS+ +N +T A  +   + FTT
Sbjct: 11  GKPSSGKSTMLNALTDATAKTGNFPFTT 38


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 596 FSDIWESTDDYRPGV 552
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 596 FSDIWESTDDYRPGV 552
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 596 FSDIWESTDDYRPGV 552
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 435 QLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIII 572
           Q+  A LGR+  +++  G N+    +  +  A L   DP+T TI +
Sbjct: 773 QVVPAPLGRVPVLLR--GGNILITRERIRRAAELTRNDPFTLTIAV 816


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 500 IPGTGPSTFSTFTIDRSLHQDDNH 571
           IP    S   T T+DRSL  D NH
Sbjct: 328 IPIQSTSDNHTVTVDRSLSNDGNH 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,241
Number of Sequences: 5004
Number of extensions: 67250
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)