Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0109
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)              197   9e-51
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               39   0.004
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   39   0.005
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   37   0.014
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              34   0.13 
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)              31   0.71 
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)                   31   0.71 
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)                 29   3.8  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   6.6  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   8.8  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score =  197 bits (480), Expect = 9e-51
 Identities = 99/153 (64%), Positives = 113/153 (73%)
 Frame = +3

Query: 261 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 440
           P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +                C  +
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM----------------CTIM 56

Query: 441 KRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKIT 620
           K            RQ  +L YLEQVRQHL+RLPSIDP TRT+++CGFPNVGKSSF+NK+T
Sbjct: 57  K------------RQNQSLQYLEQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVT 104

Query: 621 RADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
           RADV+VQPYAFTTKSL+VGH DYKYLRWQV+DT
Sbjct: 105 RADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDT 137


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 576 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 689
           GFPN GKS+ +  I+RA   V  Y FTT +  VG  +Y
Sbjct: 2   GFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
           + + GFP+VGKS+ + K+T+       Y FTT +   G  +Y     Q++D
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLD 116


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 576 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
           GFP+VGKS+ +  +     EV  Y FTT +   G   YK  + Q++D
Sbjct: 55  GFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLD 101


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTT 659
           + + GFP+VGKS+ + K+T+       Y FTT
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTT 97


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 561 TIIICGFPNVGKSSFINKITRA 626
           T+ + GFPNVGKSS IN + R+
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRS 478


>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
          Length = 299

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 516 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSL-YVGH 680
           R  +A LP  D  T TI + G+PNVGKSS IN I ++  V V      TK   YV H
Sbjct: 149 RNAVADLPE-DALT-TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYVCH 203


>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
          Length = 357

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYL 698
           +++ G  NVGK+SF+  +T+ ++E  P AF    L +     K+L
Sbjct: 9   VVLTGDNNVGKTSFLINLTQNELEGTPTAFANYELGLEVGSQKFL 53


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 570 ICGFPNVGKSSFINKITRADV-EVQPYAFTTK 662
           + G+PNVGKSS IN +    V +V P A  TK
Sbjct: 172 LIGYPNVGKSSIINTLKAKKVCKVAPIAGETK 203


>SB_43986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 447 AALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTR--TIIICGFPN 587
           + LG++   ++   AN  Y+E+++   A+L S++ YTR  +I I G P+
Sbjct: 68  STLGKLVVRVEENAANEEYIEKLK---AKLDSLEQYTRKNSIEIAGMPS 113


>SB_7100| Best HMM Match : zf-DBF (HMM E-Value=2.6e-09)
          Length = 242

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +3

Query: 93  TAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLD 272
           +A+DF+    S T R         +++ ++RG +I KV+   +N+   L + ++ +P+L+
Sbjct: 68  SAEDFLKWAESNTSRAGTGKRQASHRVRKLRGAFI-KVEDQSRNYRP-LFKEMKSWPRLN 125

Query: 273 -DVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI 371
            D  P Y    +V   K   K    +   AR  +
Sbjct: 126 FDAPPGYGPFDDVTAPKTRAKSSSSEPRQARKCV 159


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 333 LGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTYLEQ 512
           LGLGQ+  AR  ++N ++ + ++LK     Y   ++  +     + ++KR+ A     + 
Sbjct: 277 LGLGQMYIARRDLNNASQCFEKVLKAMPGNYETMKILGSLYSPSSDLVKRELARQHLKKV 336

Query: 513 VRQH 524
             QH
Sbjct: 337 TEQH 340


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 142 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 249
           L++S+  IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 280 WTSSNFGNS*IILDSRSWKFCWV 212
           W S N GNS ++  SRSW   W+
Sbjct: 793 WYSPNEGNSSLLRLSRSWPAVWI 815


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 571
           H HHH +A +  +I  T PS  ST +  R  H   +H
Sbjct: 35  HPHHHHSAITTIHIITTVPSPTSTSSSQRYHHHPHHH 71



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 571
           H HHH +A +  +I  T PS  ST +  R  H   +H
Sbjct: 67  HPHHHHSAITTIHIIITAPSPPSTSSSQRHHHHPHHH 103



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 HGHHHETARS*SYIPGTGPSTFSTFTIDRSLHQDDNH 571
           H HHH +A +  +I  T PS  ST +  R  H   +H
Sbjct: 229 HPHHHHSAITTIHIIITAPSPPSTSSSQRHHHHPHHH 265


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 267 LDDVHPFYADLMNVLYDKDHYKLG---LGQLNTARHLI 371
           LDD   F  +L N L++++  KLG    G+L  A HL+
Sbjct: 483 LDDGRQFTTELFNTLHEEELAKLGGPSKGKLGQASHLL 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,307,005
Number of Sequences: 59808
Number of extensions: 494623
Number of successful extensions: 1030
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)