Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0109
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 354 4e-98
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 325 2e-89
At1g80770.1 68414.m09476 expressed protein 81 1e-15
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 66 2e-11
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 43 2e-04
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p... 38 0.009
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p... 38 0.009
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 38 0.009
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 35 0.047
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 34 0.11
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 33 0.25
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 32 0.33
At1g30580.1 68414.m03741 expressed protein 32 0.44
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 31 0.58
At3g10830.1 68416.m01304 hypothetical protein 31 1.0
At3g47450.2 68416.m05160 expressed protein 30 1.3
At3g47450.1 68416.m05159 expressed protein 30 1.3
At4g13030.2 68417.m02034 expressed protein 30 1.8
At4g13030.1 68417.m02033 expressed protein 30 1.8
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 30 1.8
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 29 2.3
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 29 2.3
At3g21700.3 68416.m02737 expressed protein 29 2.3
At3g21700.2 68416.m02735 expressed protein 29 2.3
At3g21700.1 68416.m02736 expressed protein 29 2.3
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 29 3.1
At4g35170.1 68417.m05000 hypothetical protein predicted protein,... 28 5.4
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein... 28 5.4
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 28 5.4
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 28 7.2
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 354 bits (870), Expect = 4e-98
Identities = 157/210 (74%), Positives = 189/210 (90%)
Frame = +3
Query: 90 PTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKL 269
P K+F+DIILS+TQR+TPTVVHK YKI+R+R FY+RKVKYTQ NFH +LS II EFP+L
Sbjct: 13 PNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHAKLSAIIDEFPRL 72
Query: 270 DDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRA 449
+ +HPFY DL++VLY+KDHYKL LGQ+NTAR+LI ++KDYV+LLKYGDSLYRCK LK A
Sbjct: 73 EQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYGDSLYRCKCLKVA 132
Query: 450 ALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRAD 629
ALGRM T++KR +L YLEQ+RQH+ARLPSIDP TRT++ICG+PNVGKSSF+NK+TRAD
Sbjct: 133 ALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFMNKVTRAD 192
Query: 630 VEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
V+VQPYAFTTKSL+VGHTDYKYLR+QVIDT
Sbjct: 193 VDVQPYAFTTKSLFVGHTDYKYLRYQVIDT 222
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 325 bits (799), Expect = 2e-89
Identities = 146/210 (69%), Positives = 181/210 (86%)
Frame = +3
Query: 90 PTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKL 269
P K F+DI+LS+TQR+TPTVVHK +I ++R FY+RKVK+T+ NF+++LS II EFP+L
Sbjct: 42 PNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNEKLSAIIDEFPRL 101
Query: 270 DDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRA 449
++ PFY DL++VLY+KDHYKL LGQ+NTA++ I +A DYV+LLK+GDSLYRCK LK A
Sbjct: 102 KEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHGDSLYRCKCLKVA 161
Query: 450 ALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRAD 629
ALGRM T+MK G +L YLEQVRQH+ARLPSIDP TRT++ICG PNVGKSSF+NK+TRAD
Sbjct: 162 ALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDPNTRTLLICGCPNVGKSSFMNKVTRAD 221
Query: 630 VEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
V VQPYAFTTKSL++GHTDYK LR+QVIDT
Sbjct: 222 VAVQPYAFTTKSLFLGHTDYKCLRYQVIDT 251
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 80.6 bits (190), Expect = 1e-15
Identities = 42/161 (26%), Positives = 81/161 (50%)
Frame = +3
Query: 237 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGD 416
L ++ FP+ +HP+ L+++ Y+ LG+++ R + +V K++ L
Sbjct: 147 LKGYMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKAL 206
Query: 417 SLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGK 596
S ++ + ++ + ++QG + L + + L +P +D T+ + G PNVGK
Sbjct: 207 SKKEAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLVGAPNVGK 266
Query: 597 SSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
SS + ++ E+ Y FTT+ + +GH Y R+QV DT
Sbjct: 267 SSLVRILSTGKPEICNYPFTTRGILMGHIVLNYQRFQVTDT 307
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 66.5 bits (155), Expect = 2e-11
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Frame = +3
Query: 90 PTAKDFIDIILSKTQRKTPTVVHK---HYKISRIRGFYIRKVKYTQQNFHDRLSRIIQEF 260
PT DF I + Q T++ H IS IR Y KV ++L+ ++ EF
Sbjct: 14 PTELDFDRAIRFEYQIPNCTLIPDRVCHDDISDIRQKYAVKVMSAGTTLSNKLNDVLHEF 73
Query: 261 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG---DSLYRC 431
P + + P YA L++ Y+ HY + Q++ + L++ ++ +YV LL+ DS +C
Sbjct: 74 PCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDDDCDSRDKC 133
Query: 432 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLA 530
+ L AL RM T K L L+QVR+ +A
Sbjct: 134 RSLGVTALARMLTFAKSCIPALNLLDQVREFMA 166
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 570 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
+ GFP+VGKS+ +NK+T EV Y FTT + G Y+ + Q++D
Sbjct: 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD 118
>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
protein, putative very strong similarity to
developmentally regulated GTP binding protein (DRG1)
[Arabidopsis thaliana] GI:2345150
Length = 399
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
+ + GFP+VGKS+ + +T E Y FTT + G Y + Q++D
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLD 115
>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
protein (DRG1) identical to developmentally regulated
GTP binding protein (DRG1) [Arabidopsis thaliana]
GI:2345150
Length = 399
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
+ + GFP+VGKS+ + +T E Y FTT + G Y + Q++D
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLD 115
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 570 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVID 716
+ G PN GKS+ + ++RA V YAFTT +G+ +Y V D
Sbjct: 831 LVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDDFSMTVAD 879
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 561 TIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTD 686
T+ I G PNVGKSS IN + RA V V T+SL H D
Sbjct: 255 TVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQEVHLD 297
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 552 YTRTIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTK 662
Y I I G PNVGKSS +N + R D V P + TT+
Sbjct: 367 YIPAIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTR 404
Score = 27.9 bits (59), Expect = 7.2
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Frame = +3
Query: 366 LIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTY-LEQVRQHLARLPS 542
+++ A+D VR Y +L R +++ + T +R+G L +Q+ +HL +
Sbjct: 107 VLEKEARDIVR--DYATTLSRELKIEDETIEGKET--RRKGKRLAKNTQQIPEHLLQ--- 159
Query: 543 IDPYTRTIIICGFPNVGKSSFINKI---TRADVEVQPYAFTTKSLYVGHTDYKYLRWQVI 713
+ I G PNVGKS+ N++ RA V +P T LY G + + + V+
Sbjct: 160 ------RVAIVGRPNVGKSALFNRLVGENRAIVVDEP-GVTRDRLY-GRSYWGDQEFVVV 211
Query: 714 DT 719
DT
Sbjct: 212 DT 213
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Frame = +3
Query: 237 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI----------DNVAK 386
LS +Q+F K+ D+ F+ +L +D+ K + +N A H + +NV K
Sbjct: 77 LSLDLQQFKKISDIENFFINL------EDNPKGVIPCMNAAVHKVLFDQWETNEFENVMK 130
Query: 387 DYVRLLKYGDSLYRCKQLKRAALGRMATI 473
VRL Y +S K L+ A +G++ T+
Sbjct: 131 INVRLHNYPESSISLKNLRAAYIGKLVTV 159
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 504 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTK 662
L V + ARL S D ++ G+PNVGKSS IN + +V +V P TK
Sbjct: 293 LLSVLRQFARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 345
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 570 ICGFPNVGKSSFINKITRADVEVQPYAFTT 659
I G PNVGKS+ N +T+ + + + F T
Sbjct: 29 IVGLPNVGKSTLFNTLTKLSIPAENFPFCT 58
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 570 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKY 695
I G PN GKS+ ++ I+ A + Y FTT +G + Y
Sbjct: 383 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY 424
>At3g10830.1 68416.m01304 hypothetical protein
Length = 147
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 93 TAKDFIDIILSKTQRKTPTVVHKHY------KISRIRGFYIRKVKYTQQNFHDRLSRIIQ 254
T KDF+D I+S + + + + K I + V+ + F LS++ +
Sbjct: 35 TEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKTSVETVRCVGKTFMHMLSKVSR 94
Query: 255 EFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 350
EFP + HP L+ +D H L Q+
Sbjct: 95 EFPPRNRTHP--GGLLYQRFDPTHLSLARQQV 124
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 558 RTIIICGFPNVGKSSFINKITRADVEVQPYA 650
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 558 RTIIICGFPNVGKSSFINKITRADVEVQPYA 650
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At4g13030.2 68417.m02034 expressed protein
Length = 479
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 549 PYTRTIIICGFPNVGKSSFINKITR 623
P T +I++ G GKSS +NKITR
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITR 126
>At4g13030.1 68417.m02033 expressed protein
Length = 481
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 549 PYTRTIIICGFPNVGKSSFINKITR 623
P T +I++ G GKSS +NKITR
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITR 128
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 570 ICGFPNVGKSSFINKITRADV 632
I G+PNVGKSS IN++ + +
Sbjct: 218 IIGYPNVGKSSLINRLLKRKI 238
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 561 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
T+++ G PNVGKS+ N+ A V P T+ + G LR+ V+D+
Sbjct: 119 TVMLMGRPNVGKSALYNR--EALVYNTPDDHVTRDIREGIAKLGDLRFNVLDS 169
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 336 GLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMAT-IMKRQGANLTYLEQ 512
G+G + AR I A +++K DSL ++ LG +AT I+ R+GA + +
Sbjct: 808 GVGGVYPARVTISGEASSSGKVVKLPDSLEELIEIGEKKLGFVATKILSREGAEIDDIRI 867
Query: 513 VR 518
+R
Sbjct: 868 IR 869
>At3g21700.3 68416.m02737 expressed protein
Length = 292
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 710
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At3g21700.2 68416.m02735 expressed protein
Length = 248
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 710
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At3g21700.1 68416.m02736 expressed protein
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 710
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 504 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKI 617
L+ V L + + +P T +++ G PNVGKS+ IN I
Sbjct: 120 LDLVELKLKEVIAREP-TLLVMVVGVPNVGKSALINSI 156
>At4g35170.1 68417.m05000 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 163
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 449 GSGSHGHHHETARS*SYIPGTGP-----STFSTFTIDRSLHQDDNH 571
G S+ HH A S SY +GP S+ +DR H+D+++
Sbjct: 48 GQVSNFQHHSVAESSSYPRSSGPLRNEYSSVQVHDLDRRTHEDEDY 93
>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
(NAC2) identical to AtNAC2 [Arabidopsis thaliana]
GI:12060426; contains Pfam PF02365: No apical meristem
(NAM) domain; similar to jasmonic acid 2 GB:AAF04915
from [Lycopersicon esculentum]
Length = 364
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 407 IWRFVVSVQTAQTCGSGSHGHHHETARS*SYIPG 508
I+R + + +G H HHH +RS ++ PG
Sbjct: 197 IFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPG 230
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 564 IIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTDYKYLRWQVIDT 719
I I G PNVGKSS +N ++++ V A TT+ + + + + ++DT
Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDT 372
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 87 SPTAKDFIDIILSKTQRKTPT 149
SPTAKDF+ +L+K RK T
Sbjct: 375 SPTAKDFVKRLLNKDHRKRMT 395
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,418
Number of Sequences: 28952
Number of extensions: 346733
Number of successful extensions: 867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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