Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0108
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    73   2e-15
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    26   0.28 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 72.5 bits (170), Expect = 2e-15
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
 Frame = -3

Query: 545 DHIQEIKISNNVPLTLKEAVFSNLPALRTLQ-LDLSS--IRELPEE-FISNSPLRTLSLA 378
           D +  +K+++ +  +++      +  L  L+ LDLS+  +R +P+  F     L+ + L 
Sbjct: 15  DSLLTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQ 74

Query: 377 RNQLRALPRSVLRGQTQ--LTSLTLSYNAVAELAPELFADLRALETFVMDGNELQVLPDS 204
            N +  + R   +G     LT +  S+N+V  +    FADL  LE   +D N ++ L   
Sbjct: 75  DNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERR 134

Query: 203 LFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQL 36
            F  L++L  ++L+ NKI+ I+  TFQ    +  LDL+YN ++    +++  +  L
Sbjct: 135 AFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSL 190



 Score = 59.3 bits (137), Expect = 2e-11
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
 Frame = -3

Query: 587 NSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEEF-- 414
           N    L+   F  L  ++ + +  N   T+    F NLP L  L L  +SI  L      
Sbjct: 126 NRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFD 185

Query: 413 -ISNSPLRTLSLARNQLRAL--PRSV-------LRGQTQLTSLTLSYNAVAELAPELFAD 264
            + +  +  ++++ N+L  L    SV       L G   +  L LS+N +  +A + F  
Sbjct: 186 QVGSLGMFHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRP 245

Query: 263 LR-ALETFVMDGNELQVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSY 87
           +  +L    +  N+L      LF  + +L  + L +N +  +  +TF+    ++ LD S+
Sbjct: 246 VELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSH 305

Query: 86  NRLAFAPDSLYSPLNQL 36
           NR++  P+ L+  L  L
Sbjct: 306 NRISEIPNDLFRFLGNL 322



 Score = 55.2 bits (127), Expect = 4e-10
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
 Frame = -3

Query: 587 NSFRYLDSEIFRGLDHIQEIKISNNVPLTLK--EAVFSNLP-ALRTLQLDLSSIRELPEE 417
           N    +D+  F+G+  +  + + +N  LTL+     F  L   L  L LD  S+ ++P  
Sbjct: 404 NRLGQIDAGTFKGIPRLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPA- 462

Query: 416 FISNSPLRTLSLARNQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVM 237
            +S   L +LSLA N L  +   V    + L  L L YN ++ + P +   L  L    +
Sbjct: 463 -LSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAV-PIVTHSLTELRHLSL 520

Query: 236 DGNELQVLPD-SLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNR 81
           +GN +  L + SL      L  ++L+N  ++V+    F     +RTL +   R
Sbjct: 521 EGNPITTLSNTSLLGAANQLEELNLKNIDLTVLESGAFCKMQPLRTLKIGVYR 573



 Score = 52.8 bits (121), Expect = 2e-09
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
 Frame = -3

Query: 398 LRTLSLARNQLRALPRSVLRG-QTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNEL 222
           ++ L L+ N + ++ +   R  +  L  L L +N +     +LF ++  L+   +  N L
Sbjct: 225 IKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSL 284

Query: 221 QVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLY 54
             L    F   + L  +   +N+IS I  + F+   ++R +D S+NRL   PD+L+
Sbjct: 285 YELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLF 340



 Score = 37.5 bits (83), Expect = 9e-05
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = -3

Query: 374 NQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQVLPDSLFS 195
           + ++  P   ++   +L  L LS N +  +    F  LR+L+   +  N ++++    F 
Sbjct: 28  SSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQ 87

Query: 194 G--LRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKL 27
           G   R+LT V    N +  +  +TF     +  + L  NR+       +  L  L +L
Sbjct: 88  GDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRL 145


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 587 NSFR-YLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRE 429
           N FR Y +  +F   D I  + +++   L +  AVF     +RTL + LS I+E
Sbjct: 65  NQFRSYSNFSVFL-FDIITIVTLTSTSILLIVNAVFVKEKRIRTLLIKLSEIKE 117


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 338 GQTQLTSLTLSYNAVAELAPELFADLRALETF 243
           G T L SLT+  N VAE  P++   +  L T+
Sbjct: 246 GVTILLSLTVFLNLVAETLPQVSDAIPLLGTY 277


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 338 GQTQLTSLTLSYNAVAELAPELFADLRALETF 243
           G T L SLT+  N VAE  P++   +  L T+
Sbjct: 246 GVTILLSLTVFLNLVAETLPQVSDAIPLLGTY 277


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 338 GQTQLTSLTLSYNAVAELAPELFADLRALETF 243
           G T L SLT+  N VAE  P++   +  L T+
Sbjct: 246 GVTILLSLTVFLNLVAETLPQVSDAIPLLGTY 277


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 338 GQTQLTSLTLSYNAVAELAP 279
           G T L SLT+  N VAE  P
Sbjct: 246 GVTILLSLTVFLNLVAEKIP 265


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 338 GQTQLTSLTLSYNAVAELAP 279
           G T L SLT+  N VAE  P
Sbjct: 246 GVTILLSLTVFLNLVAEKIP 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,166
Number of Sequences: 336
Number of extensions: 1920
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)