Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0108
(604 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 72 5e-15
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 22 4.0
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 22 4.0
S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor prot... 21 7.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.0
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 21 9.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.3
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 71.7 bits (168), Expect = 5e-15
Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 3/185 (1%)
Frame = -3
Query: 548 LDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEE-FISNSPLRTLSLARN 372
L +QE+ + N + + + L LRT +S+ LPE F S LR + LA N
Sbjct: 236 LRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYN 295
Query: 371 QLRALPRSVLRGQTQLTSLTLSYNAVA--ELAPELFADLRALETFVMDGNELQVLPDSLF 198
LR LP+ + QL L L+ N + + F L L + N L + +F
Sbjct: 296 GLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMF 355
Query: 197 SGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTL 18
L L + LRNN I I N F ++ TL+LS N+L L+ N L L L
Sbjct: 356 KDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLF---NGLFVLNRL 412
Query: 17 TLAWN 3
TL+ N
Sbjct: 413 TLSGN 417
Score = 68.5 bits (160), Expect = 5e-14
Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 3/203 (1%)
Frame = -3
Query: 602 FTMMRNSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLD---LSSIR 432
F NS L +F ++EI ++ N L + +F+ L L L L L S R
Sbjct: 266 FNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDR 325
Query: 431 ELPEEFISNSPLRTLSLARNQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRAL 252
F+ L L+L+ N L + + + L L L N++ + F L L
Sbjct: 326 VDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNL 385
Query: 251 ETFVMDGNELQVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAF 72
T + N+L+ + LF+GL L ++L N I+ I F+ + ++ LDLS N L
Sbjct: 386 HTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS 445
Query: 71 APDSLYSPLNQLHKLQTLTLAWN 3
PD+ L L L+TL L N
Sbjct: 446 VPDA----LRDLALLKTLDLGEN 464
Score = 58.4 bits (135), Expect = 5e-11
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 1/175 (0%)
Frame = -3
Query: 596 MMRNSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIREL-PE 420
+ NS ++S F L ++ +++S+N T+ +F+ L L L L ++I + P
Sbjct: 366 LRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPL 425
Query: 419 EFISNSPLRTLSLARNQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFV 240
F + S L+ L L+ N+L ++P LR L +L L N ++ F +L L
Sbjct: 426 AFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLR 484
Query: 239 MDGNELQVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLA 75
+ GN++ L + L NL ++L NK+ + F+ + + L N L+
Sbjct: 485 LIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLS 539
Score = 57.6 bits (133), Expect = 9e-11
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = -3
Query: 422 EEFISNSPLRTLSLARNQLRALPR-SVLRGQTQLTSLTLSYNAVAELAPELFADLRALET 246
+E + +R L L+RN++ L S L QL L L NA+ E+A + L L T
Sbjct: 206 DESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRT 265
Query: 245 FVMDGNELQVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRL 78
F N L LP+ LF+ R+L + L N + + F + L+L+ NRL
Sbjct: 266 FNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321
Score = 53.2 bits (122), Expect = 2e-09
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 1/186 (0%)
Frame = -3
Query: 572 LDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEE-FISNSPL 396
+D F GL + + +S N+ + +F +L L+ L L +SI + F+ L
Sbjct: 326 VDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNL 385
Query: 395 RTLSLARNQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQV 216
TL L+ N+LR + + G L LTLS NA+A + P F + L+ + GNEL
Sbjct: 386 HTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS 445
Query: 215 LPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQL 36
+PD+ LR+L ++TLDL NR++ + + L+QL
Sbjct: 446 VPDA----LRDLAL---------------------LKTLDLGENRISNFYNGSFRNLDQL 480
Query: 35 HKLQTL 18
L+ +
Sbjct: 481 TGLRLI 486
Score = 46.0 bits (104), Expect = 3e-07
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Frame = -3
Query: 506 LTLKEAVFSNLPALRTLQLDLSSIRELP-EEFISNSPLRTLSLARNQLRALPRSVLRGQT 330
L L F L L TL++ S+++ LP S L+TL+L N+LR + L +
Sbjct: 136 LELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRD 195
Query: 329 QLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQVLPD-SLFSGLRNLTTVSLRNNK 153
+ + AD+R L+ + NE+ L + S LR L + L+ N
Sbjct: 196 SDDGSDGNDGDESSCR----ADIRILD---LSRNEITRLQENSPLLDLRQLQELHLQRNA 248
Query: 152 ISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTLTLAWN 3
I I+ + G T +RT + SYN L P+ L++ L ++ LA+N
Sbjct: 249 IVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIH---LAYN 295
Score = 45.6 bits (103), Expect = 4e-07
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = -3
Query: 323 TSLTLSYNAVAELAPELFADLRALETFVMDGNELQVLPDSLFSGLRNLTTVSLRNNKISV 144
T + L N + EL +F + + ++G+ ++ + + F+GL NL + L +N+I
Sbjct: 797 TEVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRE 856
Query: 143 ISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQ 24
+ F+ + +R L L N + F + + PL L L+
Sbjct: 857 LKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILR 896
Score = 43.2 bits (97), Expect = 2e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Frame = -3
Query: 374 NQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQVLPDSLFS 195
N LR L V G+ + L ++ + + + F L L+ ++ N ++ L F
Sbjct: 804 NVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 863
Query: 194 GLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAP 66
L +L + L+NN I I TF S+ L LS NRL P
Sbjct: 864 RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFP 906
Score = 35.1 bits (77), Expect = 5e-04
Identities = 32/173 (18%), Positives = 75/173 (43%)
Frame = -3
Query: 596 MMRNSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEE 417
++ N L + L ++Q + ++ N ++ F L ++LD + + ++
Sbjct: 485 LIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGV 544
Query: 416 FISNSPLRTLSLARNQLRALPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVM 237
F S + L L+L+ N + + + G L L + N + L + +R + +
Sbjct: 545 FTSIASLLLLNLSENHIEWFDYAFIPGN--LKWLDIHGNFIESLGN--YYKIRDSKVKTL 600
Query: 236 DGNELQVLPDSLFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRL 78
D + ++ S S ++ + + NN I+++ NTF ++ +D+ N +
Sbjct: 601 DASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653
Score = 27.9 bits (59), Expect = 0.081
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 587 NSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPE-EFI 411
N R L F L H++E+ + NN+ + F L +L L+L + + P +
Sbjct: 852 NRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVT 911
Query: 410 SNSPLRTLSLARN 372
N+ L LSL N
Sbjct: 912 LNARLVELSLGSN 924
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAPEL 273
G T L SLT+ N VAE P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAPEL 273
G T L SLT+ N VAE P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAPEL 273
G T L SLT+ N VAE P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAPEL 273
G T L SLT+ N VAE P++
Sbjct: 297 GVTILLSLTVFLNLVAETLPQV 318
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 22.2 bits (45), Expect = 4.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 504 YSQRGGVLEPPGTE 463
Y+QRG V+ PP T+
Sbjct: 895 YNQRGTVVSPPPTK 908
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 22.2 bits (45), Expect = 4.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 504 YSQRGGVLEPPGTE 463
Y+QRG V+ PP T+
Sbjct: 933 YNQRGTVVSPPPTK 946
>S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor
protein.
Length = 168
Score = 21.4 bits (43), Expect = 7.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 197 SGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSY 87
S L +L R NK++V + G S+ T+ +SY
Sbjct: 61 SPLLSLVCADTRLNKLAVFIVAGAVGVFSVLTILISY 97
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAP 279
G T L SLT+ N VAE P
Sbjct: 266 GVTILLSLTVFLNMVAETMP 285
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 21.0 bits (42), Expect = 9.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 81 PIVREIQRADGRG 119
P R ++R+DGRG
Sbjct: 1 PRTRRVKRSDGRG 13
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAP 279
G T L SLT+ N VAE P
Sbjct: 229 GVTILLSLTVFLNLVAESMP 248
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAP 279
G T L SLT+ N VAE P
Sbjct: 229 GVTILLSLTVFLNLVAESMP 248
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAP 279
G T L SLT+ N VAE P
Sbjct: 229 GVTILLSLTVFLNLVAESMP 248
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 338 GQTQLTSLTLSYNAVAELAP 279
G T L SLT+ N VAE P
Sbjct: 297 GVTILLSLTVFLNLVAESMP 316
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,831
Number of Sequences: 438
Number of extensions: 2536
Number of successful extensions: 32
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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