Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0093
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 173 4e-44
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 163 6e-41
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 155 2e-38
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 118 1e-37
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 36 0.009
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.11
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 32 0.15
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 0.44
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 0.59
08_02_0610 + 19307537-19308011,19308187-19310846 29 1.4
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 29 1.4
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712... 29 1.4
11_06_0437 - 23533218-23536382 29 1.8
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 1.8
11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074... 28 2.4
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 3.1
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 3.1
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 27 4.1
02_05_0664 + 30717551-30719491 27 4.1
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 27 4.1
01_05_0423 + 22032940-22033695 27 4.1
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 5.5
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 5.5
02_01_0363 - 2612873-2613814 27 5.5
02_01_0358 - 2575858-2576796 27 5.5
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 27 5.5
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 27 7.2
04_03_0737 - 19152942-19154930 27 7.2
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603... 27 7.2
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 26 9.6
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 26 9.6
02_04_0413 + 22681957-22682035,22682253-22682788 26 9.6
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 26 9.6
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 173 bits (421), Expect = 4e-44
Identities = 73/118 (61%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
Frame = +2
Query: 47 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 223
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 224 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 397
VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRL 118
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 163 bits (395), Expect = 6e-41
Identities = 71/122 (58%), Positives = 96/122 (78%), Gaps = 5/122 (4%)
Frame = +2
Query: 47 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 211
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 212 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 391
AK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDL 133
Query: 392 KI 397
++
Sbjct: 134 RL 135
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 155 bits (375), Expect = 2e-38
Identities = 72/131 (54%), Positives = 94/131 (71%), Gaps = 14/131 (10%)
Frame = +2
Query: 47 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 184
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 185 TSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMA 364
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT 1442
Query: 365 DNGDLREDLKI 397
++G ++DL++
Sbjct: 1443 ESGGTKDDLRL 1453
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 118 bits (283), Expect(2) = 1e-37
Identities = 49/77 (63%), Positives = 64/77 (83%)
Frame = +2
Query: 167 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 346
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 347 YLTLMADNGDLREDLKI 397
+++L+ +NG+ ++DL++
Sbjct: 134 FVSLLTENGNTKDDLRL 150
Score = 55.2 bits (127), Expect(2) = 1e-37
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 47 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 169
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 36.3 bits (80), Expect = 0.009
Identities = 14/32 (43%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Frame = +2
Query: 299 HVKREDYQLTDISDDG-YLTLMADNGDLREDL 391
H+ R +YQL DIS+DG +++L+ ++G+ ++DL
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDL 77
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 87 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 200
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 60 KTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTXTLKFTWLGLI 239
K + + P TP P PP P P ++ + P K T T+ +W L
Sbjct: 277 KLYKTSPPTPTPTPPPPAMTSPPKLNLAAKPNGTSGTVTSTPTVKRRVTETV--SWDSLP 334
Query: 240 SSMVKSMKI 266
+S++KS+K+
Sbjct: 335 TSLIKSVKV 343
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 0.44
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 48 WVTSKTHTSRPETPGPQPPSPCNV 119
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 8 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 184
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 73 EVCVFDVTHCCVLNLTTVRNDM 8
+VC FD+ CC L T+ NDM
Sbjct: 835 DVCHFDLRTCCALPPATLENDM 856
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 290 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 397
D P+ RE +++ ++ D Y+T D+G L ED+K+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKV 71
>03_05_1012 +
29670310-29670512,29670856-29671001,29671169-29671245,
29671329-29671451,29671558-29671660,29672100-29672173,
29672249-29672329,29672411-29672563,29672780-29672881
Length = 353
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 313 FALHVGYVHVV-CGGTDIFILFTIEDINPNQVNFSVXVLSGFGCGHFNNLAW 161
F L GY+ + GT++F F + NP+ + ++ G C F+ LA+
Sbjct: 63 FYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAY 114
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 209 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 346
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 63 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 191
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>11_04_0228 +
15105752-15105921,15106774-15106919,15107369-15107448,
15107598-15107720,15107814-15107906
Length = 203
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 313 FALHVGYVHV-VCGGTDIFILFTIEDINPNQVNFSVXVLSGFGCGHFNNLA 164
F+L GYV V G +F F + NP+ + + G GC + LA
Sbjct: 52 FSLETGYVEVNESTGVQLFYYFVRSEKNPDLDPLLLWLTGGPGCSSISGLA 102
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 149 LKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 268
LK + V+ TSK G+ GH KV V ++ KK D+
Sbjct: 679 LKNQDLLDVDSGTSKIGQSGHDKVEHVTNELSISKKAADV 718
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 80 GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 238
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 252 LPLKISIPTK*TLAXPCFPVLDVDISTILHGRPFSITKPFLRRA 121
L L +++PT+ + VL D+STI + P +TK F+ R+
Sbjct: 204 LQLALNVPTEESSLTFGDRVLKNDLSTIRNDSPLLLTKTFMHRS 247
>02_05_0664 + 30717551-30719491
Length = 646
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 203 HGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 304
HG+ L+ D+ G D+ HNM++ H+
Sbjct: 385 HGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHI 418
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 386 PHAGHRCQPSGSGSHHPRYQSVG 318
PHA HR P S +P ++++G
Sbjct: 200 PHAAHRGMPIDESSENPHWRAIG 222
>01_05_0423 + 22032940-22033695
Length = 251
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 54 TSKTHTSRPETPGPQPPSPCNVRPC 128
TS T T+ P P P PP P + + C
Sbjct: 17 TSNTSTTPPPQPPPPPPPPPHPQAC 41
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 365 QPSGSGSHHPRYQSVGSLRASRGVRPCCVWR 273
+PSG+ + P Q +L +RG R C VWR
Sbjct: 22 RPSGTANQSPNSQIGQTL--TRGPRTCAVWR 50
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 57 SKTHTSRPETPGPQPPSPCNVRP 125
S +SRP +PGP+P +P VRP
Sbjct: 308 SSAPSSRPSSPGPRPRAP--VRP 328
>02_01_0363 - 2612873-2613814
Length = 313
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 39 TQQWVTSKTHTSRPETPGPQPPSPC 113
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>02_01_0358 - 2575858-2576796
Length = 312
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 39 TQQWVTSKTHTSRPETPGPQPPSPC 113
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 331 ISQLVVFALHVGYVHVVCGGTD-IFILFTIEDINPNQ 224
IS L+ F G VH+V GG+D + IL++ + I+ ++
Sbjct: 126 ISCLMTFMSAAGEVHLVSGGSDGLLILWSADHIHDSR 162
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/71 (30%), Positives = 26/71 (36%)
Frame = +3
Query: 87 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTXTLKFTWLGLISSMVKSMKI 266
P P P SP + R T S AR P P +T T L L + S
Sbjct: 531 PSPSPQSPVSARTSSATPSPT-----ARTPSPAPPSPIATKTSTSVVLSLAAVRATSPAT 585
Query: 267 SVPPHTTWTYP 299
S PP T + P
Sbjct: 586 SSPPRATSSLP 596
>04_03_0737 - 19152942-19154930
Length = 662
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 21 TVVKFKTQQWVTSKTHTSRPETPGPQPP 104
+ V T+ T+ T T+R + P PQPP
Sbjct: 46 STVSVSTRPATTTTTTTTRSQPPPPQPP 73
>02_03_0264 +
17059279-17059638,17060226-17060260,17060307-17060385,
17060580-17061123,17061328-17061404
Length = 364
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 84 TPGPQPPSPCNVRPCVKT 137
+P PQ P+PCN R C T
Sbjct: 14 SPIPQIPNPCNFRSCSLT 31
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 95 SATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGH 211
S + P+QC AL V L P S+ G HGH
Sbjct: 59 SHSHPLQCKALELCFNVALNRLPASAAVASSPLLGGHGH 97
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 60 KTHTSRPETPGPQPPSPCNVRPCVKTV--SLC*RVVHARLLKCPHP 191
+T R + P P PP VRP K LC + LL P+P
Sbjct: 49 RTAKQRKQQPPPPPPDAATVRPLAKRFLPFLCRALQVLPLLLRPNP 94
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 78 PETPGPQP-PSPCNVRPCVKTVSLC 149
P P P P PSPC PC ++ + C
Sbjct: 90 PRPPHPPPSPSPCVHPPCCESAAGC 114
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +3
Query: 63 THTSR-PETPGPQPPSPCNVRP 125
T+T P P PQPPS C P
Sbjct: 241 TYTDHLPPPPPPQPPSVCKTEP 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,793
Number of Sequences: 37544
Number of extensions: 268755
Number of successful extensions: 1169
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -