Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0093
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 173 3e-44
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 161 2e-40
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 30 0.52
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 30 0.52
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 30 0.52
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 30 0.52
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 0.91
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 1.6
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 2.8
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 4.9
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 27 6.4
AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical ... 27 6.4
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr... 26 8.5
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 173 bits (422), Expect = 3e-44
Identities = 82/114 (71%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
Frame = +2
Query: 59 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 238
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 239 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKI 397
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKL 119
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 161 bits (391), Expect = 2e-40
Identities = 75/114 (65%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
Frame = +2
Query: 59 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 238
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 239 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKI 397
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKM 153
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 24 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 140
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 24 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 140
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 24 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 140
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 24 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 140
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 0.91
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 54 TSKTHTSRPETPGPQPPSPCNVRP 125
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 239 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 394
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 141 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 49
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.1 bits (57), Expect = 4.9
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -1
Query: 385 LTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVX 206
LTQV V H GQ+ ++ I++ + L G V G D++ IE++ +V +V
Sbjct: 144 LTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-GKVELTVE 201
Query: 205 VLSGFGCGHFN 173
+G C N
Sbjct: 202 P-AGIHCAPAN 211
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 198 PVLDVDISTILHGRPFSITKPF----LRRAEHCMGKVAEAPESPVSKCVSSMS 52
P+L + T+ +GRP KP + + H + +A P+ P +K + S
Sbjct: 371 PLLAAPLKTLNNGRPSFFIKPKNVEPMPQLGHSLSSIAVTPQKPAAKFTTRSS 423
>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
protein Y57A10A.15 protein.
Length = 1072
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 242 FNGKKYEDICPSTHNMDVPHV 304
F K E +CP HN PHV
Sbjct: 25 FERKTIETVCPRVHNYLFPHV 45
>AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical
protein C46E10.8 protein.
Length = 172
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 68 HFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 220
H ET DSGA A + A +GF + P ++ +S + + G +V
Sbjct: 86 HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136
>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 228 LGLISSMVKSMKISVPPHTTWT 293
+G + M S+ + VPP+T WT
Sbjct: 599 MGPMGPMTPSIPVQVPPNTMWT 620
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 54 TSKTHTSRPETPGPQPPSPCNV 119
TS + T+ P TP P PP P +
Sbjct: 452 TSYSSTTPPTTPKPAPPPPSRI 473
>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 228 LGLISSMVKSMKISVPPHTTWT 293
+G + M S+ + VPP+T WT
Sbjct: 599 MGPMGPMTPSIPVQVPPNTMWT 620
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,436
Number of Sequences: 27780
Number of extensions: 218429
Number of successful extensions: 751
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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