Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0092
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 40 2e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 39 5e-04
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 38 8e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 37 0.002
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 32 0.053
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 32 0.070
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 32 0.070
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 30 0.21
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 29 0.37
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 0.87
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.1
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.6
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 3.5
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 4.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 40.3 bits (90), Expect = 2e-04
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEVHQPN-----SVFCPV--CDKSFTRKSTLIVHMKKHYESG 381
C IC ++F K AA+ RH +HQ + CP+ C KSFTR S L KKH
Sbjct: 206 CSICGRQF-KTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSAL----KKHI--- 257
Query: 382 EGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMR 489
S G+ H CD CG ++ L+ H R
Sbjct: 258 ----SVIHEGNMAFH-CDSCGTKFGYKHMLQRHLER 288
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 232 CDKEFTKRAAYQRHMDEVHQPNSVFCPV--CDKSFTRKSTLIVHMKKH 369
C K++++ + ++H+ C C K+F RKS L +H + H
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCH 77
Score = 28.3 bits (60), Expect = 0.87
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +1
Query: 244 FTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEV 423
F K + Q H+ E H P+ C +C + F + L H+ H T L + +
Sbjct: 188 FEKWSQLQNHIREAHVPS---CSICGRQFKTAAHLRHHVVLH---------QTTLEERKT 235
Query: 424 HACDL--CGAQYDNADALRSH 480
+ C + C + + AL+ H
Sbjct: 236 YHCPMEGCKKSFTRSSALKKH 256
Score = 27.9 bits (59), Expect = 1.1
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 20/107 (18%)
Frame = +1
Query: 232 CDKEFTKRAAYQRHMDEVHQ---PNSVFCPVCDKSFTRKSTLIVHMKKHYES-------- 378
CD+ F+K + H+ H P C+ F K L H+ + +E
Sbjct: 120 CDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPH 179
Query: 379 -----GEG----SSSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
EG S + + V +C +CG Q+ A LR H + H
Sbjct: 180 ESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVLH 226
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 205 PLEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFC--PVCDKSFTRKSTLIVHM 360
P Y G CD +F + +RH++ +P C CD+ F++ L H+
Sbjct: 82 PFSCHYDG-CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHI 134
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 232 CDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHM-KKHYESGEGSS 393
C K FT++ +RH + CP C SFTR L H+ +KH + + S
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGS 78
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 38.3 bits (85), Expect = 8e-04
Identities = 26/122 (21%), Positives = 48/122 (39%)
Frame = +1
Query: 4 PQHKVSHKVSKHEIVDASQLARVQHSTPTPASVAKRRLXXXXXXXXXXXXKKLRSDDSIE 183
PQ V+ + E + ++ L + S +P S+ +K R + +
Sbjct: 353 PQQSVTGSYNSGETM-STYLNQTNTSGRSPNSMEATEQIGTIGTDGSMKRRKRRQPSNRK 411
Query: 184 TDQQSTGPLEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMK 363
T + + C C K+F + +RH+ +H F +C K F+R+ L H +
Sbjct: 412 TSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHER 471
Query: 364 KH 369
H
Sbjct: 472 LH 473
Score = 31.5 bits (68), Expect = 0.093
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 298 SVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRS 477
S CP C K F R H+++H S S E+ C +CG ++ D LR
Sbjct: 422 SFVCPECSKKFKRSE----HLRRHIRSLHTS--------EKPFVC-ICGKRFSRRDNLRQ 468
Query: 478 HKMRH 492
H+ H
Sbjct: 469 HERLH 473
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/105 (26%), Positives = 45/105 (42%)
Frame = +1
Query: 166 SDDSIETDQQSTGPLEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKST 345
S +++ +S G + G C+K FT+ + HM+ C +C KSF R+
Sbjct: 556 SSSKAKSESKSQGNYVCTFAG-CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQ-- 612
Query: 346 LIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSH 480
H K+ +E TG+ + AC C ++ DAL H
Sbjct: 613 ---HDKRRHE-----QLHTGI---KAFACVTCNQRFARMDALNRH 646
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 32.3 bits (70), Expect = 0.053
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 247 TKRAAYQRHMDEVHQPNSVFC--PVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEE 420
T R A H+ C P CD+SFTR L HM+ +E+ S
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEADTLRPSDPIPKAHP 147
Query: 421 VHACDLCGAQYDNADALRSHKMRH 492
+H ++ A +A R+ + H
Sbjct: 148 MHPQNVANAMVQSAREARAQQQMH 171
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 232 CDKEFTKRAAYQRHMDEVHQPNSV 303
CD+ FT+ A +HM VH+ +++
Sbjct: 113 CDRSFTRSDALAKHMRTVHEADTL 136
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.9 bits (69), Expect = 0.070
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEV--HQPNSVFCPVCDKSFTRKSTLIVHMKKH 369
C C + F ++ RH+ +P P C K FTR+ LI H++ H
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 31.9 bits (69), Expect = 0.070
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 232 CDKEFTKRAAYQRHMDEVHQPNSVF-CPVCDKSFTRKSTLIVHMKK 366
C K FT++ +RH + H+ F C C+++F R L H+++
Sbjct: 33 CPKSFTRKEHLRRH-ERTHENVKAFSCSFCNRAFARSDVLNRHVQQ 77
Score = 29.5 bits (63), Expect = 0.37
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 235 DKEFTKRAAYQRHMDEVHQPNSVFC--PVCDKSFTRKSTLIVHMKKHYESGEGSSSATGL 408
++ FT++ +R +C P C KSFTRK H+++H + E
Sbjct: 4 EESFTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKE----HLRRHERTHE-------- 51
Query: 409 GDEEVHACDLCGAQYDNADALRSHKMRHH 495
+ + +C C + +D L H + H
Sbjct: 52 -NVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHY 372
C C K FT+ RH + + CP C+ RK L H+++ +
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 29.5 bits (63), Expect = 0.37
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSS 393
P+ V CPVC K+ T + + H+ HY G S
Sbjct: 4 PDHVQCPVCAKTVT-MNDINPHLDSHYSDSSGPS 36
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 0.87
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEVH---QPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSS 393
C +C K F + RH+ H +P+ P C K F+R L H + H + +
Sbjct: 28 CPLCTKAFYRLEHQTRHI-RTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNANSRRN 86
Query: 394 SA 399
+A
Sbjct: 87 AA 88
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHACDL--CGAQYDNAD 465
P CP+C K+F R + H +H + G E+ H C C ++ +D
Sbjct: 23 PRPYKCPLCTKAFYR----LEHQTRHIRTHTG---------EKPHVCTFPGCAKRFSRSD 69
Query: 466 ALRSHKMRH 492
L H H
Sbjct: 70 ELTRHARIH 78
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +1
Query: 307 CPV--CDKSFTRKSTLIVHMKKHYESGEGSSSATGLG------DEEVHACDLCGAQYDNA 462
CPV CDK++ ++ L H + S + + + + + + C++C +Y N
Sbjct: 352 CPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNL 411
Query: 463 DALRSHKMRHH 495
+ L+ H+ H
Sbjct: 412 NGLKYHRTHSH 422
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 174 VVRSQLLIRVHNCDFNLWWQSSFGNGCRSRRRMLNASQLRGIDDFMFTD 28
VV+ LL D+ + + G +S +R+ A QLR +DD TD
Sbjct: 28 VVKPYLLPEKSTSDYENSGKGTVGQVLQSLQRVRRALQLRSLDDNQSTD 76
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 208 LEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFT 333
L ++ CG C +F Y+ NS CP+C SFT
Sbjct: 1571 LPNKRCGTCRHKFHASCLYKWFKSS----NSSRCPLCRSSFT 1608
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHM-DEVHQPN 297
C +C+K+F AY HM + H+ N
Sbjct: 72 CEVCNKKFYSEGAYSSHMASKKHRDN 97
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 280 EVHQPNSVFCPVCDKSFTRKSTLIVH--MKKH 369
E+ N + C VC+K+F ++ L H KKH
Sbjct: 263 EIVNSNPIMCMVCNKNFRSQNQLENHENSKKH 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,848
Number of Sequences: 5004
Number of extensions: 41830
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -