Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0092
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    42   6e-06
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    36   4e-04
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      34   9e-04
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    29   0.025
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.077
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.18 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 41.5 bits (93), Expect = 6e-06
 Identities = 25/91 (27%), Positives = 36/91 (39%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSAT 402
           C +C K F +      HM          C  C K FT    L VH + H          T
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTH----------T 227

Query: 403 GLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
           G   E+ + CD+CG  +     L+ H++ H+
Sbjct: 228 G---EKPYTCDICGKSFGYNHVLKLHQVAHY 255



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVF-CPVCDKSFTRKSTLIVHMKKHYES 378
           C IC K F      + H    H    V+ C +C ++F  K T+ +H+K H +S
Sbjct: 234 CDICGKSFGYNHVLKLHQ-VAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDS 285



 Score = 31.5 bits (68), Expect = 0.006
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDE--VHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSS 396
           C +C K F ++  YQ H+        +   C +C K+F   + L  H + H         
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTH--------- 114

Query: 397 ATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
            TG   E+ + C+ C   +   + L  H+  H
Sbjct: 115 -TG---EKPYQCEYCSKSFSVKENLSVHRRIH 142



 Score = 30.7 bits (66), Expect = 0.011
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVF-CPVCDKSFTRKSTLIVHMKKHYESGEGSSSA 399
           C  C K F+ +     H   +H     + C VC+++F     L  HM+ H          
Sbjct: 122 CEYCSKSFSVKENLSVHR-RIHTKERPYKCDVCERAFEHSGKLHRHMRIH---------- 170

Query: 400 TGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
           TG   E  H C +C   +  +  L  H   H
Sbjct: 171 TG---ERPHKCTVCSKTFIQSGQLVIHMRTH 198


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVH--QPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEG 387
           C +C K    +A+ +RH+ + H  +     C +C++ +  +++L+ H+  +++S  G
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPG 64


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 34.3 bits (75), Expect = 9e-04
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVH-QP-NSVFCPVCDKSFTRKSTLIVH 357
           C +C K  + +   +RH ++ H QP NS  C +C K F   ++L  H
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNH 420



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 HACDLCGAQYDNADALRSHKMRHH 495
           + CD+CG        L+ HK + H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQH 395



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKM 486
           C VC K+ + K TL  H ++ +     S+            C LC   +   ++L +HK 
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSA-----------VCALCHKVFRTLNSLNNHKS 422

Query: 487 RHH 495
            +H
Sbjct: 423 IYH 425



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 187 DQQSTGPLEDRYCGICDKEFTKRAAYQRHMDEVHQ 291
           +QQ   PL    C +C K F    +   H    H+
Sbjct: 392 EQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHR 426


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = +1

Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKM 486
           CP C K FTR   L  HM+ H          TG   E+ + C  C  Q+     LR H  
Sbjct: 12  CPECHKRFTRDHHLKTHMRLH----------TG---EKPYHCSHCDRQFVQVANLRRHLR 58

Query: 487 RH 492
            H
Sbjct: 59  VH 60



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 154 KKLRSDDSIETDQQSTGPLEDRYCGICDKEFTKRAAYQRHMDEVHQPNSVF-CPVC 318
           K+   D  ++T  +     +  +C  CD++F + A  +RH+  VH     + C +C
Sbjct: 17  KRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHL-RVHTGERPYACELC 71


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKH 369
           C  C+K +    A + H+     P    C +C K+F+R   L  H++ H
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCK--CHLCGKAFSRPWLLQGHIRTH 65



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVHQPNSVF-CPVCDKSF 330
           C +C K F++    Q H+   H     F C  C+++F
Sbjct: 45  CHLCGKAFSRPWLLQGHI-RTHTGEKPFSCQHCNRAF 80


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 223 CGICDKEFTKRAAYQRHMDEVH-QPN-SVFCPVCDKSFTRKSTLIVH 357
           C  C+K  T     +RH+  VH +P+    C +C + ++  ++L  H
Sbjct: 5   CEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH 51



 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 430 CDLCGAQYDNADALRSHKMRHH 495
           C++C   Y + ++LR+HK  +H
Sbjct: 35  CNICKRVYSSLNSLRNHKSIYH 56


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 406 LGDEEVHACDLCGAQYDNADAL 471
           LG+E VH     G Q+  A  L
Sbjct: 14  LGNESVHGIQKWGTQFGQAPLL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,350
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)