Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0092
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3... 39 0.002
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 38 0.004
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 38 0.006
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 36 0.020
At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein ... 36 0.026
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ... 36 0.026
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 35 0.034
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 35 0.034
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ... 35 0.034
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 35 0.045
At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein ... 34 0.079
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 34 0.079
At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ... 33 0.14
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ... 33 0.18
At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein ... 32 0.32
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 32 0.32
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 32 0.32
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 31 0.56
At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein ... 31 0.56
At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ... 31 0.74
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 30 0.98
At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein ... 30 0.98
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 30 0.98
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 30 0.98
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 30 0.98
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 30 0.98
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 30 1.3
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 30 1.3
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 30 1.3
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 29 1.7
At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein ... 29 1.7
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 29 2.3
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)... 29 3.0
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 29 3.0
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 29 3.0
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 28 4.0
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 28 4.0
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 28 4.0
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 28 4.0
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 28 4.0
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 28 4.0
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 28 5.2
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 28 5.2
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 28 5.2
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 27 6.9
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 27 6.9
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 27 9.1
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ... 27 9.1
At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein ... 27 9.1
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 27 9.1
At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein ... 27 9.1
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 27 9.1
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 27 9.1
>At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3)
identical to Cys2/His2-type zinc finger protein 3
[Arabidopsis thaliana] gi|6009889|dbj|BAA85109
Length = 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +1
Query: 283 VHQPNSVFCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSATGLGDEEVHACDLCGAQY 453
V + S C VC K+F+ L H H Y GE S + H C +CG +
Sbjct: 69 VAEKPSYKCGVCYKTFSSYQALGGHKASHRSLYGGGENDKSTPSTAVKS-HVCSVCGKSF 127
Query: 454 DNADALRSHKMRHH 495
AL HK H+
Sbjct: 128 ATGQALGGHKRCHY 141
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATG 405
C VC KSF L H + HY+ G +S G
Sbjct: 120 CSVCGKSFATGQALGGHKRCHYDGGVSNSEGVG 152
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Frame = +1
Query: 178 IETDQQSTGPLEDRY---CGICDKEFTKRAAYQRHMDEVHQPNSV-FCPVCD---KSFTR 336
+ET ++G Y C CD+ F A H +P + F D ++
Sbjct: 137 LETSSSNSGGKAGYYVYQCKTCDRTFPSFQALGGHRASHKKPKAASFYSNLDLKKNTYAN 196
Query: 337 KSTLIVHMKKHYESGEGSSSATGLGD---EEVHACDLCGAQYDNADALRSHKMRH 492
+ +VH S S G +VH C +CGA++ + AL H RH
Sbjct: 197 DAVSLVHTTTTVFKNNNSRSLVVYGKASKNKVHECGICGAEFTSGQALGGHMRRH 251
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHY-----------ESGEGSSSATGLGDEEVHACDLCGAQY 453
C +C+K FT L H H ++GE + S ++H CD+C +
Sbjct: 195 CSICEKVFTSYQALGGHKASHSIKAAQLENAGADAGEKTRSKMLSPSGKIHKCDICHVLF 254
Query: 454 DNADALRSHKMRHH 495
AL HK RH+
Sbjct: 255 PTGQALGGHKRRHY 268
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKH-YESGEGSSSATGLGDEEVHACDLCGAQY 453
C VC KSF+ L HM+ H + GSSS+TG + +C+ GA +
Sbjct: 11 CQVCKKSFSNGKALGGHMRAHTLKFFPGSSSSTGSITPSLRSCNNLGASF 60
>At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 292
Score = 35.5 bits (78), Expect = 0.026
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEVHQPN---SVFCPVCDKSFTRKSTLIVHMKK--HYESGEG 387
C CDK F A H +P SVF V K+ + + V + S +
Sbjct: 120 CKTCDKSFHSFQALGGHRASHKKPKLGASVFKCVEKKTASASTVETVEAGAVGSFLSLQV 179
Query: 388 SSSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
+SS E+ H C +C A++ + AL H RH
Sbjct: 180 TSSDGSKKPEKTHECSICKAEFSSGQALGGHMRRH 214
>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 286
Score = 35.5 bits (78), Expect = 0.026
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +1
Query: 169 DDSIETDQQSTGPLEDRYCGICDKEFTKRAAYQRH--MDEVHQPNSVFCPVCDK-SFTRK 339
++ E + +S P +C IC+K+F+ AY H + + N K +K
Sbjct: 33 EERSEDEDESPQPQRKHFCVICEKQFSSGKAYGGHVRIHSIEYNNKGKMKKMKKMKLKKK 92
Query: 340 STLIVHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
+ + K + E + T + + ++ C LCG ++ +L H RH
Sbjct: 93 KKRKIGLVKKEKEKEIDLARTDV-EGKIRCC-LCGKEFQTMHSLFGHMRRH 141
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 35.1 bits (77), Expect = 0.034
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 265 QRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKH 369
Q +E+ P++ FC +C K F R + L +HM+ H
Sbjct: 232 QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGH 266
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 35.1 bits (77), Expect = 0.034
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 265 QRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKH 369
Q +E+ P++ FC +C K F R + L +HM+ H
Sbjct: 232 QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGH 266
>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
(ZAT10) / salt-tolerance zinc finger protein (STZ)
identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA zinc finger protein STZ/ZAT10
(STZ/ZAT10) GI:9965730
Length = 227
Score = 35.1 bits (77), Expect = 0.034
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYE------SGEG---------SSSATGLGDEEVHACDLC 441
C VCDK+F+ L H H + SG G ++SA G + H C +C
Sbjct: 82 CSVCDKTFSSYQALGGHKASHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTIC 141
Query: 442 GAQYDNADALRSHKMRHH 495
+ + AL HK H+
Sbjct: 142 NKSFPSGQALGGHKRCHY 159
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEE 420
C +C+KSF L H + HYE G + + + + + E
Sbjct: 138 CTICNKSFPSGQALGGHKRCHYE-GNNNINTSSVSNSE 174
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESG--EGSSSATGLGDEEV-HACDLCGAQYDNADALRS 477
C C+K F L H H S EG + + + V H C +CGA++ AL
Sbjct: 36 CKTCNKEFPSFQALGGHRASHRRSAALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGG 95
Query: 478 HKMRH 492
H +H
Sbjct: 96 HMRKH 100
>At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein
(ZAT12) identical to zinc finger protein ZAT12
[Arabidopsis thaliana] gi|1418325|emb|CAA67232
Length = 162
Score = 33.9 bits (74), Expect = 0.079
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +1
Query: 265 QRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEV--HACDL 438
Q ++D Q C C K F L H H + + S+ + + H C +
Sbjct: 27 QENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKPNNDALSSGLMKKVKTSSHPCPI 86
Query: 439 CGAQYDNADALRSHKMRH 492
CG ++ AL H RH
Sbjct: 87 CGVEFPMGQALGGHMRRH 104
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 33.9 bits (74), Expect = 0.079
Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Frame = +1
Query: 229 ICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKH------YESGEGS 390
+ K+ +H E H N C C+K F+ L H H E +
Sbjct: 24 LAQTSMVKQIGLNQHT-ESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVK 82
Query: 391 SSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
+ H C +C + AL H RH
Sbjct: 83 HLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRH 116
>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 398
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 412 DEEVHACDLCGAQYDNADALRSHKMRH 492
+ +VH C +CGA++ + AL H RH
Sbjct: 257 NNKVHECGICGAEFTSGQALGGHMRRH 283
>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 211
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 373 ESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
ES S++ T L + H C CG ++ N+ AL H+ H
Sbjct: 43 ESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAH 82
>At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein
(ZAT7) identical to zinc finger protein ZAT7
[Arabidopsis thaliana] gi|1418341|emb|CAA67234; contains
Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 168
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYE--SGEGSSSATGLGDEEV---HACDLCGAQYDNADAL 471
C C K F+ L H H + + + S L +++ H C +CG ++ AL
Sbjct: 42 CKTCLKEFSSFQALGGHRASHKKLINSDNPSLLGSLSNKKTKTSHPCPICGVKFPMGQAL 101
Query: 472 RSHKMRH 492
H RH
Sbjct: 102 GGHMRRH 108
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 31.9 bits (69), Expect = 0.32
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMDEVH-QPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSA 399
C +C+K F A H +P +V D S T + IV +KH + G
Sbjct: 108 CNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDS-TAPTISIVAGEKHPIAASG---- 162
Query: 400 TGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
++H C +C + AL HK H+
Sbjct: 163 ------KIHECSICHKVFPTGQALGGHKRCHY 188
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 418 EVHACDLCGAQYDNADALRSHKMRH 492
+VH C +CG+++ + AL H RH
Sbjct: 186 KVHECSICGSEFTSGQALGGHMRRH 210
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +1
Query: 214 DRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCP-----VCDKSFTRKSTLIVHMKKHYES 378
D C +C K F+ A H +P + + + S + ++++++ + +
Sbjct: 96 DYKCTVCGKSFSSYQALGGHKTSHRKPTNTSITSGNQELSNNSHSNSGSVVINVTVNTGN 155
Query: 379 GEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
G S ++H C +C + + AL HK H+
Sbjct: 156 GVSQSG-------KIHTCSICFKSFASGQALGGHKRCHY 187
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESG-EGSSSATGLGDEEVHA----CDLCGAQYDNADAL 471
C +C KSF L H + HY+ G G+ + + E+ A D+ ++ A+
Sbjct: 166 CSICFKSFASGQALGGHKRCHYDGGNNGNGNGSSSNSVELVAGSDVSDVDNERWSEESAI 225
Query: 472 RSHK 483
H+
Sbjct: 226 GGHR 229
>At3g49930.1 68416.m05460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 215
Score = 31.1 bits (67), Expect = 0.56
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 238 KEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHM--KKHYESGEGSSSATGLG 411
+ +TKR +RH + QPN P ++ + L++ H+ S + L
Sbjct: 34 ESWTKRKRTKRH--RIDQPNP---PPSEEEYLALCLLMLARGSSDHHSPPSDHHSLSPLS 88
Query: 412 DEEV-HACDLCGAQYDNADALRSHKMRH 492
D + + C +CG + + AL HK H
Sbjct: 89 DHQKDYKCSVCGKSFPSYQALGGHKTSH 116
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSS 396
C +C KSF L H + HY+ G G+S+
Sbjct: 151 CSICFKSFPSGQALGGHKRCHYDGGNGNSN 180
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Frame = +1
Query: 184 TDQQSTGPLEDRY----CGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLI 351
+D S PL D C +C K F A H +P SV + + T +
Sbjct: 79 SDHHSLSPLSDHQKDYKCSVCGKSFPSYQALGGHKTSHRKPVSVDVNNSNGTVTNNGNI- 137
Query: 352 VHMKKHYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
G +G + H C +C + + AL HK H+
Sbjct: 138 ---------SNGLVGQSG----KTHNCSICFKSFPSGQALGGHKRCHY 172
>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 364
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 283 VHQPNSVFCPVCDKSFTRKSTLIVHMKKHYES 378
V P FC VCD+ F LI H K+ +E+
Sbjct: 111 VKPPEPYFCGVCDRRFYTNEKLINHFKQIHET 142
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 205 PLEDRYCGICDKEFTKRAAYQRHMDEVHQ 291
P E +CG+CD+ F H ++H+
Sbjct: 113 PPEPYFCGVCDRRFYTNEKLINHFKQIHE 141
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 30.3 bits (65), Expect = 0.98
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Frame = +1
Query: 292 PNSVF-CPVCDKSFTRKSTLIVHMKKHYES--------GEGSSSAT----------GLGD 414
P ++ C VCDK+F+ L H H +S G+ S+++ G G
Sbjct: 85 PTPIYKCSVCDKAFSSYQALGGHKASHRKSFSLTQSAGGDELSTSSAITTSGISGGGGGS 144
Query: 415 EEVHACDLCGAQYDNADALRSHKMRHH 495
+ H C +C + AL HK H+
Sbjct: 145 VKSHVCSICHKSFATGQALGGHKRCHY 171
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEE 420
C +C KSF L H + HYE G ++ + + E
Sbjct: 150 CSICHKSFATGQALGGHKRCHYEGKNGGGVSSSVSNSE 187
>At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGD 414
C +C KSF L HMK H S + SS+ LGD
Sbjct: 7 CKLCSKSFCNGRALGGHMKSHLVSSQ-SSARKKLGD 41
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 30.3 bits (65), Expect = 0.98
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMD----EVHQPNSVFCPVCDKSFTRKSTLIVHMK--KHYESGE 384
C C K F +R HM +HQP C VC K ++ H+ H G
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPR---CGVCLKHCKSFESVREHLNVPDHLSKGN 75
Query: 385 GSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
+ T G C LC ++ A AL HK + H
Sbjct: 76 CKAIFTKRG------CTLCLQIFEEAFALAEHKNKCH 106
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 30.3 bits (65), Expect = 0.98
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMD----EVHQPNSVFCPVCDKSFTRKSTLIVHMK--KHYESGE 384
C C K F +R HM +HQP C VC K ++ H+ H G
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPR---CGVCLKHCKSFESVREHLNVPDHLSKGN 75
Query: 385 GSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
+ T G C LC ++ A AL HK + H
Sbjct: 76 CKAIFTKRG------CTLCLQIFEEAFALAEHKNKCH 106
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYE---SGEGSSSATGLGDEEV--HACDLCGAQYDNADAL 471
C C S ++ + H++ H++ E A + +E H C CGA++ L
Sbjct: 22 CQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPAHL 81
Query: 472 RSHKMRH 492
+ H H
Sbjct: 82 KQHMQSH 88
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 220 YCGICDKEFTKRAAYQRHMDEVHQPNSVFCPV--CDKSFTRKSTLIVHMKKHYESGEGSS 393
Y C + ++ RH+ H+ CP C F+ + + H+KK++ +
Sbjct: 97 YVDDCAASYRRKDHLNRHL-LTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNRDK 155
Query: 394 SATGLGD 414
TGLGD
Sbjct: 156 DNTGLGD 162
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 220 YCGICDKEFTKRAAYQRHMDEVHQPNSVFCPV--CDKSFTRKSTLIVHMKKHYESGEGSS 393
Y C + ++ RH+ H+ CP C F+ + + H+KK++ +
Sbjct: 9 YVDDCAASYRRKDHLNRHL-LTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNRDK 67
Query: 394 SATGLGD 414
TGLGD
Sbjct: 68 DNTGLGD 74
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKH 369
N FC +C+K F R+ L +H + H
Sbjct: 4 NRFFCEICNKGFQREQNLQLHKRGH 28
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 211 EDRYCGICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVH-MKKHYES 378
E +C CD+EF +H H C VC K + S +++H ++ H E+
Sbjct: 10 EKVWCYYCDREFDDEKILVQHQKAKH----FKCHVCHKKLSTASGMVIHVLQVHKEN 62
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 229 ICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKH-YESGEGSSSATG 405
+C K F + Q H+ P C +C K+F R + + +HM H E +G+ S G
Sbjct: 160 VCGKRFWIPSPAQIHVG----PMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLKG 215
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSAT 402
P CPVC K+F R + + +HM H Y G S T
Sbjct: 214 PTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGT 253
>At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 164
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYE-------SGEGSSSATGLGDEEVHACDLCGAQYDNAD 465
C C K F+ L H H + S GS S H C +CG ++
Sbjct: 39 CKTCLKEFSSFQALGGHRASHKKLINSSDPSLLGSLSNKKTKTATSHPCPICGVEFPMGQ 98
Query: 466 ALRSHKMRH 492
AL H RH
Sbjct: 99 ALGGHMRRH 107
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 304 FCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSAT 402
+C +C K F R + L +HM+ H Y++ E S T
Sbjct: 218 YCQICGKGFKRDANLRMHMRAHGDEYKTREALISPT 253
>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 526
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVH---MKKHYESGEGSSSATGLGDEEV 423
P S F P CD +T+ STL H + E E S + + L E+V
Sbjct: 261 PPSTFGPSCDVEYTKASTL-QHGSVQSREQEHSEASKARSSLDSEDV 306
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVH---MKKHYESGEGSSSATGLGDEEV 423
P S F P CD +T+ STL H + E E S + + L E+V
Sbjct: 343 PPSTFGPSCDVEYTKASTL-QHGSVQSREQEHSEASKARSSLDSEDV 388
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 403 GLGDEEVHACDLCGAQYDNADALRSHKMRH 492
G+ +++VH C +C + + AL HK H
Sbjct: 236 GVKEKKVHECPICFRVFTSGQALGGHKRSH 265
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 409 GDEEVHACDLCGAQYDNADALRSHKMRH 492
G+E+ H C CG ++ + AL HK H
Sbjct: 74 GEEKKHICCECGKRFVSGKALGGHKRIH 101
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1
Query: 376 SGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRH 492
S +G++++ H C++C + AL HK H
Sbjct: 395 SAQGTNTSLSSSHNGDHVCNICHKSFSTGQALGGHKRCH 433
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 490 VSFCETSAHQHYRTARRKDR 431
+SFC+ + +HY++A KDR
Sbjct: 243 ISFCDLTVKEHYKSALSKDR 262
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSAT 402
P CP+C K+F R + + +HM H Y G S T
Sbjct: 253 PTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGT 292
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHAC 432
N C VC+K F R+ L +H + H + +T +V+ C
Sbjct: 81 NRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLC 126
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSSATGLGDEEVHAC 432
N C VC+K F R+ L +H + H + +T +V+ C
Sbjct: 79 NRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLC 124
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSAT 402
P CP+C K+F R + + +HM H Y G S T
Sbjct: 175 PTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGT 214
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 70 REPVARHRRFHVY*LCGKLCAVA 2
+EP A HR F +Y LC KLC+V+
Sbjct: 464 KEPWAYHR-FCLYHLCSKLCSVS 485
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKH 369
N C VC+K F R+ L +H + H
Sbjct: 80 NRFLCEVCNKGFQREQNLQLHRRGH 104
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 292 PNSVFCPVCDKSFTRKSTLIVHMKKH---YESGEGSSSATGLGDEEVHACDLCGAQ--YD 456
P C VC+K+F R + + +HM H Y G S T + C A+ +
Sbjct: 98 PTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEGCKN 157
Query: 457 NADALRSHKMR 489
N D RS ++
Sbjct: 158 NIDHPRSKPLK 168
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 319 DKSFT-RKSTLIVHMKKHYESGEGSSSATGL--GD--EEVHACDLCGAQYDNADALRSHK 483
DKS + KS + + + E E S+S G+ G+ + +H C CG ++ + H+
Sbjct: 284 DKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQ 343
Query: 484 MRH 492
H
Sbjct: 344 RMH 346
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +1
Query: 220 YCGICDKEFTKRAAYQ------RHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESG 381
Y +CD+ + K+ A+Q + V+ PN + +F + T I KK Y+
Sbjct: 72 YLTMCDRSYPKKLAFQYLEDLKNEFERVNGPN-IETAARPYAFIKFDTFIQKTKKLYQDT 130
Query: 382 EGSSSATGLGDE--EVH 426
+ L DE EVH
Sbjct: 131 RTQRNIAKLNDELYEVH 147
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 223 CGICDKEFTKRAAYQRHMD-EVHQPNSVFCPVCDKSFTRKSTLIVHM 360
CG C ++F K+ HM H + C +C+K +L H+
Sbjct: 8 CGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 431
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = +1
Query: 367 HYESGEGSSSATGLGDEEVHACDLCGAQYDNADALRSHKMRHH 495
H E A GD +C CG ++ +A +H + H
Sbjct: 177 HQSRRENDREAAINGDNSSVSCHKCGEKFSKLEAAEAHHLTKH 219
>At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 170
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYE-SGEGSSSATGLGDEE--------VHACDLCGAQYDN 459
C C++ F L H H + + S G ++ H C +CG ++
Sbjct: 38 CKTCERDFDSFQALGGHRASHSKLTNSDDKSLPGSPKKKPKTTTTTTAHTCPICGLEFPM 97
Query: 460 ADALRSHKMRH 492
AL H +H
Sbjct: 98 GQALGGHMRKH 108
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKH 369
N C VC+K F R L +H + H
Sbjct: 66 NRFICEVCNKGFKRDQNLQLHRRGH 90
>At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 251
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 307 CPVCDKSFTRKSTLIVHMKKHYES 378
CP C+ F HM HY+S
Sbjct: 171 CPKCNSIFDTSQKFAAHMSSHYKS 194
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 295 NSVFCPVCDKSFTRKSTLIVHMKKH 369
N C VC+K F R L +H + H
Sbjct: 90 NRFICEVCNKGFQRDQNLQLHKRGH 114
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 415 EEVHACDLCGAQYDNADALRSHKMRHH 495
EE H C LC + N AL H MR H
Sbjct: 2 EERHKCKLCWKSFANGRALGGH-MRSH 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,528
Number of Sequences: 28952
Number of extensions: 229844
Number of successful extensions: 879
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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