Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0088
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   0.93 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   0.93 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   2.8  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.0  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   6.5  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   6.5  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   6.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -3

Query: 132 LMFIHYFFIISFELFSVYVFLSCIKNM*IIFMYKDIGNLII 10
           + F H F ++ +++F   V  +    +  I+ Y D+  ++I
Sbjct: 195 MSFAHIFALVEYDIFKALVLQTINLQITFIWTYNDLFVMLI 235


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -3

Query: 132 LMFIHYFFIISFELFSVYVFLSCIKNM*IIFMYKDIGNLII 10
           + F H F ++ +++F   V  +    +  I+ Y D+  ++I
Sbjct: 195 MSFAHIFALVEYDIFKALVLQTINLQITFIWTYNDLFVMLI 235


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 445 PRSRPTSRTC--TQRAVLGDDARYSNRSLHSCPIRCRKPTRVNQEHHS 308
           PR+RP +RTC   +  VL   +  SNR      I+ R  TR     H+
Sbjct: 242 PRARPLARTCRDNRLLVLAGTSSPSNRFTRHL-IQRRTHTRHTTTSHN 288


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +3

Query: 156 AVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTLV 335
           A+  FLI  + F   + S        F+   FY  +    ++    +D ++L  +  T++
Sbjct: 338 AIVTFLIVMIQFEMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILDVILLILNVHTIL 397

Query: 336 GFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGI--LAASTALLGV 479
             +    Q CK          N + +V   ++  L+ +      T LLGV
Sbjct: 398 TTITKRNQWCKLLENLKLDRENNSSFVVANVLFQLIHVYYTVVFTLLLGV 447


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 124 YTLFFYHFLRTVFCLC 77
           +T  +YH L  + CLC
Sbjct: 207 HTFGYYHILAMLNCLC 222


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 141 LCLLMFIHYFFIISFELFSVYVF 73
           L  L+ I+YF +  F L  +Y F
Sbjct: 127 LLFLLCIYYFVVPLFFLLCIYYF 149


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 124 YTLFFYHFLRTVFCLC 77
           +T  +YH L  + CLC
Sbjct: 207 HTFGYYHILAMLNCLC 222


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 266 EDEFVEDIVPELVLD 222
           + + ++DIVP+ VLD
Sbjct: 114 DSDIIQDIVPQNVLD 128


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 111 FIISFELFSVYVFLSCIKNM*IIFMYKDIGNLI 13
           F+++    +VY F S I +  I F +K+IG L+
Sbjct: 255 FMMANITVAVYGFTSEIVDHGIRFSFKEIGLLV 287


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 111 FIISFELFSVYVFLSCIKNM*IIFMYKDIGNLI 13
           F+++    +VY F S I +  I F +K+IG L+
Sbjct: 255 FMMANITVAVYGFTSEIVDHGIRFSFKEIGLLV 287


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 111 FIISFELFSVYVFLSCIKNM*IIFMYKDIGNLI 13
           F+++    +VY F S I +  I F +K+IG L+
Sbjct: 255 FMMANITVAVYGFTSEIVDHGIRFSFKEIGLLV 287


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 296 HVLNVDYSEDEDEFVEDI 243
           HV+N D  +  DE+V  I
Sbjct: 480 HVINYDLPKSIDEYVHRI 497


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 125  LYIIFLSFPSNCFLFMYFYLALKTCELF 42
            +YI +L      F+F+ F+  L   + F
Sbjct: 1273 VYITYLQLEPIGFVFLIFFALLMVIQFF 1300


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 125  LYIIFLSFPSNCFLFMYFYLALKTCELF 42
            +YI +L      F+F+ F+  L   + F
Sbjct: 1273 VYITYLQLEPIGFVFLIFFALLMVIQFF 1300


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 104 FPSNCFLFMYFYLALKTCELFLCIKI 27
           + +NC + MY     + C L  C+ +
Sbjct: 226 YGNNCEIDMYMRRKCQECRLKKCLSV 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,413
Number of Sequences: 336
Number of extensions: 3049
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)