Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0088
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 0.55
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 0.73
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 28 0.96
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 28 0.96
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 1.7
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 2.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 2.9
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 2.9
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 5.1
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 5.1
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 6.8
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo... 25 6.8
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 9.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 9.0
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 9.0
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 28.7 bits (61), Expect = 0.55
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 266 EDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAVRYV 135
EDE E + + + + L+D LTE+D + + T++ E Y+
Sbjct: 235 EDELEESVSLKTIFEPSELKDKMLTEEDEIIRITDEPERMQLYM 278
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 206 DPELTEDDALDQETEDGEEAVR 141
D EL EDD++++ TE+ +EA R
Sbjct: 66 DAELEEDDSINKPTEEADEAPR 87
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.9 bits (59), Expect = 0.96
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 505 PAGKPHATATPNKAVEAASIPRSRPTSRT 419
P+ H+ ATP ++VEA ++P P T
Sbjct: 480 PSADDHSRATPTRSVEAPTLPSYAPRHPT 508
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 27.9 bits (59), Expect = 0.96
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 287 NVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALD 174
N DYSE++DEF + + L R +++E DA+D
Sbjct: 129 NEDYSEEDDEFDARMEEQEALRLQRKRLEKVSETDAID 166
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = -2
Query: 496 KPHATATPNKAVEAASIPRSRPTSRTCTQRAVLGDDARYSNRSLHSCPIRCRKPTRVNQE 317
+P + TP+ A+ SIP S T+ + + ++ ++ L P+ + T+ N
Sbjct: 570 EPPLSVTPSTAITNLSIPESNRTNSSASSKS-------FTMNDLILPPLHLKNTTQTNNA 622
Query: 316 HHSITSS 296
H SS
Sbjct: 623 HEDAQSS 629
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 203 PELTEDDALDQETEDGEEAVR 141
PE+ E++ LDQE +D EA R
Sbjct: 346 PEMDEEERLDQELQDLSEAER 366
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 263 DEFVEDIVPELVLDALSLRDPELTEDDALDQETE 162
+ +ED +LV++ +++ DP TE +A E E
Sbjct: 866 ESVLEDYPAQLVVEKIAIDDPRFTEREAPPVEVE 899
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/36 (22%), Positives = 19/36 (52%)
Frame = +3
Query: 132 INIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFW 239
+N+ C ++ ++FG L+ E + + ++FW
Sbjct: 46 LNVCLCLFFAIANALKTLLFGSLQTFELELLYEQFW 81
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 89 NSSKEMIKK*CININKHSVLLPRRLRFPDPARRLRSAPGL 208
+SS + ++K N+N P RL +P +RLR A L
Sbjct: 129 DSSTDSVQKSLANVNMDDANGPERLHYPS-VKRLREAYSL 167
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 124 YTLFFYHFLRTVFCLCIFI 68
Y FF H T+FCL FI
Sbjct: 277 YPAFFEHHFLTIFCLNAFI 295
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 478 TPNKAVEAASIPRSRPTSRTCTQRAVLGDDARYSNRSLHS 359
TP A A P PT++T +RA L ++ + S + S
Sbjct: 153 TPEIAAPANIEPEVAPTTKTPKKRAALSNEEKQSLKKFQS 192
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 333 VGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLL 440
VGFLH + LC++R Y+ P W +R LL
Sbjct: 668 VGFLHDVILLCQNRRSYMNDIP---CWSRIRRYNLL 700
>SPBC1683.10c |pcl1||ferrous iron transporter
Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 387 ASSPNTARWVHVRLVGLLLGILAASTALLGVAVA 488
A S N W+ ++G GIL+ S L+GV A
Sbjct: 12 AHSVNKIGWLRASVLGANDGILSLSGLLVGVVAA 45
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 350 QVQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDD 183
++++ DE R + + + SEDE E + V SL DPEL +D+
Sbjct: 339 EIEKNDEEHERAAKR-----IKIQPSEDEKEAEAECRLTQVATCQSLVDPELADDE 389
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -1
Query: 362 QLPHQVQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDD 183
+L H+V E ES R + L + +E+E + E +L S+ P LTE++
Sbjct: 48 RLAHKVHEDVESIYRRLER-----LQLCKRNEEEEMLNSDASEAMLTVSSVPSPTLTENE 102
Query: 182 ALDQ 171
++++
Sbjct: 103 SVNE 106
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 237 WNYVFYKFIFIFGVINVQYMDEVMLWCS 320
W VF I +++V+Y EV W S
Sbjct: 162 WVAVFLVVILAINLLHVKYFGEVEFWLS 189
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 514 VSFPAGKPHATATPNKAVEAASIPRSRP 431
+S P ++T TP K V + P RP
Sbjct: 2 ISVPLQNENSTTTPTKEVSHLNFPLKRP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,118
Number of Sequences: 5004
Number of extensions: 48476
Number of successful extensions: 190
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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