Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0088
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 46 2e-05
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66... 29 2.2
07_03_0698 - 20765305-20768526 29 2.2
11_06_0265 - 21788531-21789798,21789914-21789947 29 3.0
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 29 3.0
01_01_0606 - 4503620-4504060 29 3.0
09_06_0312 + 22235287-22235334,22235418-22235535,22235628-222356... 28 3.9
09_01_0007 + 212984-213949 28 3.9
09_01_0006 - 206409-207464 28 3.9
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 3.9
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 3.9
10_08_0445 + 17989438-17990895 28 5.2
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062... 28 5.2
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 5.2
06_03_0587 + 22555414-22557231 27 6.8
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634... 27 6.8
01_06_1431 + 37317248-37317907 27 6.8
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 27 9.0
08_01_0626 - 5445676-5446687,5447099-5447430 27 9.0
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 27 9.0
06_01_0638 + 4640218-4640808 27 9.0
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 27 9.0
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/115 (24%), Positives = 52/115 (45%)
Frame = +3
Query: 129 LINIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVM 308
L+N + V L++R+ G LR +E +R+ ++ W V + +F + + +
Sbjct: 34 LLNTGLVAMCVAWQLVKRLFLGTLREAEVERLNEQAWREVV-EILFAVTIFRQDFSVSFL 92
Query: 309 LWCSWFTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALL 473
+ LV LH + Q R EY+ ++P+ H R+V +L +L L
Sbjct: 93 AMVAALLLVKALHWLAQ---KRVEYIETTPSVPMLSHARIVSFMLFLLVVDCLFL 144
>11_01_0088 -
662984-663024,663743-663774,664079-664503,665048-666006,
666661-666846,666942-667044,667141-667323,667514-667606,
668092-668274,669011-669031
Length = 741
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -1
Query: 461 GGGQYTQE*TDQSNMHPTCCVGRRR*IFKPILAQLPHQVQEADESKPRTPQHHLVHVLNV 282
G G Y + P+ GR + F P Q PH AD S TP L H+ +
Sbjct: 568 GTGTYFPNPNLSKDRSPSGRGGRGKTHFLPHNHQRPHHYGRADMSADLTPSEELRHIYDP 627
Query: 281 DYSE 270
D ++
Sbjct: 628 DAND 631
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 370 SLHSCPIRCRKPTRVNQEHH 311
SLH C IR R P R+ + HH
Sbjct: 920 SLHICSIRSRLPPRIKELHH 939
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 397 PTQHVGCMFDWSVYSWVYWPPPQLYWALQSHGAC 498
P Q +GC DW V +W+ P LY + + G C
Sbjct: 101 PGQCIGCFEDWLVCTWLRLSIP-LYPTVGADGGC 133
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +3
Query: 318 SWFTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALLGVAVAWGL 497
SW L +H++G +C D+F L+ S N +RLV LLL S LL V
Sbjct: 1152 SWTLLA--IHIIGSMCGDKF--LSKSSNFL-MTTIRLVVLLLEAKNNSLCLLSSYVQSNR 1206
Query: 498 PA 503
PA
Sbjct: 1207 PA 1208
>01_01_0606 - 4503620-4504060
Length = 146
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 505 PAGKPHATATPNKAVEAASIPRSRPTSRTCTQR 407
P G A A K + AAS+P + PT + T+R
Sbjct: 70 PLGATPAPAPERKGMSAASLPGATPTPTSATER 102
>09_06_0312 +
22235287-22235334,22235418-22235535,22235628-22235698,
22235799-22235855,22236271-22236362,22236604-22236651,
22237397-22237517,22237596-22237642,22237796-22237877,
22238526-22238611,22238864-22238938,22239018-22239171
Length = 332
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 324 FTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALLGVAVAWGLP 500
F+ +G+L G + + A P+++R +H R GLL +L + LGV + W P
Sbjct: 21 FSYLGYLAAAGAVLPGKLVPGAVLPDSSR-LHYRCNGLLSLLLLLVLSALGVYMGWMSP 78
>09_01_0007 + 212984-213949
Length = 321
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 388 RRRPTQHVGCMFDWSVYSW-VYWPPPQLYWA-LQSHGA 495
RRRP QH +FD S W + PPQ + SHGA
Sbjct: 97 RRRPHQHHTTLFDLSRKVWPQFQHPPQAQAVHISSHGA 134
>09_01_0006 - 206409-207464
Length = 351
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 388 RRRPTQHVGCMFDWSVYSW-VYWPPPQLYWA-LQSHGA 495
RRRP QH +FD S W + PPQ + SHGA
Sbjct: 97 RRRPHQHHTTLFDLSRKVWPQFQHPPQAQAVHISSHGA 134
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 284 VDYSEDEDEFVEDIVPELVL-DALSLRDPELTEDDALDQETEDGEE 150
+D+++ DE ++++ ++V+ S+ D + D+E EDGEE
Sbjct: 689 LDFTDPADERGDEVIDQVVVKQGESMMDKDDVVSSDSDEEEEDGEE 734
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 453 PVYPGVDRPVEHAPNVLCWATTLDIQTDPCTAAPSGA 343
P+ PGV P+ AP + + ++ T P T AP G+
Sbjct: 105 PLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPGS 141
>10_08_0445 + 17989438-17990895
Length = 485
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 465 LWRRPVYPGVDRPVEHAPNVLCWATTLDIQTDPCTA-APSGAGSRRE*TKNTTAS 304
+W+ + G RPV P WATT D Q A + A +RRE K+ TA+
Sbjct: 357 MWQTILQSGRARPVT-VPKSETWATTTDEQQPRRRERAAAAAVARREIRKSATAT 410
>06_03_0726 +
23904350-23904964,23905986-23906021,23906158-23906256,
23906445-23906627,23907016-23907105,23907187-23907285,
23907584-23907688,23907786-23907926,23908009-23908296,
23908536-23908826
Length = 648
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 444 PGVDRPVEHAPNVLCWA---TTLDIQTDPCTAAPSGAGSRRE*TKNTTAS 304
P V PVE VL W T+ D+QT PC GA + + T +S
Sbjct: 518 PKVASPVEADGVVLPWLQWETSNDLQTSPCKPKTQGASTACSTSSRTMSS 567
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -1
Query: 293 VLNVDYSEDEDEFVE--DIVPELVLD-ALSLRDPELTEDDALDQETEDG 156
+++ D SE+EDE VE D E D A+ D E+ EDD + + EDG
Sbjct: 1510 MIDDDVSEEEDEDVEGDDDGEEDDADRAVDDVDAEMDEDDDIGDDGEDG 1558
>06_03_0587 + 22555414-22557231
Length = 605
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 INVQYMDEVMLWCSWFTLVGFLHLMGQLCKDRFEYLASS-PNTARWVH 419
+N YMD+ L + +G+LH M +L D + YL + P T ++H
Sbjct: 492 LNTLYMDDNYLTGNIPPTIGYLHNMNKLYMD-YNYLTGNIPPTIGYLH 538
>05_07_0323 +
29260608-29260836,29262242-29262513,29263349-29263487,
29263581-29263714,29263847-29263970,29264364-29264773
Length = 435
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 350 QVQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDI 243
QV E KPRT V LN D + DE+V +I
Sbjct: 135 QVNETAHGKPRTGIPIAVKTLNYDGLQGHDEWVAEI 170
>01_06_1431 + 37317248-37317907
Length = 219
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 377 KPILAQLPHQVQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVP--ELVLDALSLRD 204
+P A PH Q A + P L +D +ED+D+ E+++P E+V A + RD
Sbjct: 125 RPAAALAPHIPQSAPVNVPVAQFRRLSVEALMDKAEDDDDDDEEMLPPHEMVARARA-RD 183
Query: 203 PELTEDDALD 174
+T L+
Sbjct: 184 SPMTTFSVLE 193
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 410 TCCVGRRR*IFKPILAQLPHQVQEADESKPRTPQHHLVHVLNVDYSE 270
T CVG+++ I++ + H+V E +T H L +LN+D E
Sbjct: 543 TPCVGQKQDIYRLVKVLGTHKVAERYSVGKKTTDHAL-EILNLDKKE 588
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 377 KPILAQLPHQVQEADESKPRTP-QHHLVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDP 201
+P L +L ++ DE + +H + H + D +DE+E E+ E D
Sbjct: 163 RPQLKRLKIHMRWFDEDAMESEMEHEMEHEMMHDDDDDEEEEEEEEEEE---------DE 213
Query: 200 ELTEDDALDQETEDGEE 150
L ED+ +D + ++GEE
Sbjct: 214 FLYEDENVDDDEDEGEE 230
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 150 FLAVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVFYK 257
FL ++ F I + F QL SE ++V + NYV YK
Sbjct: 112 FLCMW-FNIHTLFFVQLTSSETRKVLEHIINYVLYK 146
>06_01_0638 + 4640218-4640808
Length = 196
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 505 PAGKPHATATPNKAVEAASIPRSRPTSRTCTQR 407
P G A A K + AAS+P + PT T+R
Sbjct: 70 PLGATPAPAPERKGMAAASLPGATPTLTPATER 102
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 324 FTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALLGVAVAWGLP 500
F+ +G+L G + + A P+++R +H R GL+ +L + LGV + W P
Sbjct: 21 FSYLGYLATAGAVLPGKLVPGAVLPDSSR-LHYRCNGLVSLLLLLVLSALGVYMGWMSP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,706
Number of Sequences: 37544
Number of extensions: 347004
Number of successful extensions: 1298
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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