Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0088
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.47 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.62 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.62 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.62 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 1   PRYNYKVSDIFIHKNNSHVFNAR*KYINRKQFEGN--DKKIMYKH 129
           P+    +S+  IH NN++ +N    Y N+  +  N  +KK+ YK+
Sbjct: 79  PKIISSLSNKTIHNNNNYKYN----YNNKYNYNNNNYNKKLYYKN 119


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 410
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 410
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 410
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 240 YATVGYMAKRIQMRKNRFQKIAESMKTAR 268


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 444 PGVDRPVEHAPNVLCWATTLDIQTDPCTAAPSGAGSRRE*TKNTTASPRPCTER 283
           P +DR   H  + L  ++      DPC +   G G   E + N+T +   C  +
Sbjct: 59  PSIDRSSIHEESYLAESSR---SIDPCASKYCGIGKECELSPNSTIAVCVCMRK 109


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 1   PRYNYKVSDIFIHKNNSHVFNAR*KYINRKQFEGN 105
           P+    +S+  IH NN++ +N      N   +  N
Sbjct: 312 PKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNN 346


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 477 RPIKLWRRPVYPGVDRPVEHAPNVLCWATTL 385
           RP   W    YP       + P+  C ATT+
Sbjct: 208 RPAANWGYYAYPYCYNLTPNQPSAQCEATTM 238


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 302 LVHVLNVDYSEDEDE 258
           ++H  NVD +ED DE
Sbjct: 412 ILHEHNVDDNEDHDE 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,848
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)