Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0085
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   136   2e-33
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    28   0.91 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   4.9  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.9  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.4  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   8.5  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  136 bits (330), Expect = 2e-33
 Identities = 67/147 (45%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
 Frame = +1

Query: 67  MKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 246
           M   +   + D ++F N+++ T+ Q+AR FNS+ + PRK   +L+KI YL+  GE    +
Sbjct: 1   MSYSKKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEK 60

Query: 247 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKD-MTGKDDEYRPA 423
           +AT++FF  TKLFQ KD  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG++  YRP 
Sbjct: 61  QATELFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPN 120

Query: 424 AIRALCSITDSTMLQAIERYMKQAIVD 504
           AIR+L  + D+  + AIER +   IVD
Sbjct: 121 AIRSLIRVIDANTVPAIERILTTGIVD 147


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 510 SCSRICRTGLRFASVSTVPDLVRRWINEAQE 602
           SC  I +TG + AS ST   L+R W +E  E
Sbjct: 179 SCLGISKTGSKIASSSTNGTLIRIWNSETGE 209


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 154 FNSTPVHPRKCIHILTKILYLLNQGEE 234
           F   PV       I  KIL+LLN+G E
Sbjct: 281 FPQPPVESHSSFDIKQKILHLLNEGNE 307


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 125 LSRFWKTLLSSSFPSRRAFIML 60
           L +FW  LL+++FP ++A   L
Sbjct: 401 LHQFWNALLNTTFPDKKAMAPL 422


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 91  EEDSNVFQNLDKTTLLQEARYFNSTPV 171
           EED N  +N  K+ +   A+Y  ST V
Sbjct: 302 EEDPNPLKNKSKSPIAHGAKYMTSTEV 328


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 486 ETSYC**ESCSRICRTGLRFASVSTVPDL 572
           ETSY    +  R+C  G +F ++ST+P++
Sbjct: 133 ETSYA---NQDRMCYWGYKFEAISTLPEI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,402
Number of Sequences: 5004
Number of extensions: 52065
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)