Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0085
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 180 6e-46
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 162 2e-40
08_02_0707 - 20212190-20214592 31 0.53
11_04_0414 + 17386806-17387936 29 2.8
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 29 2.8
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 29 2.8
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 29 3.7
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 28 6.5
06_03_0536 + 21906583-21908037 28 6.5
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 27 8.7
02_01_0412 - 3005600-3007759 27 8.7
01_05_0604 - 23583244-23584989 27 8.7
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 180 bits (439), Expect = 6e-46
Identities = 90/152 (59%), Positives = 108/152 (71%)
Frame = +1
Query: 58 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 237
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQGE
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 238 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYR 417
T EAT++FFA TKLFQSKD LRRLVYL IKELSP + +VIIVTSSL KDM K D YR
Sbjct: 63 TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYR 122
Query: 418 PAAIRALCSITDSTMLQAIERYMKQAIVDKNP 513
AIR LC I D T+L IERY+KQAIVDKNP
Sbjct: 123 ANAIRVLCRIIDGTLLTQIERYLKQAIVDKNP 154
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 162 bits (393), Expect = 2e-40
Identities = 88/159 (55%), Positives = 106/159 (66%), Gaps = 17/159 (10%)
Frame = +1
Query: 88 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 267
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG+ T EAT++FF
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 268 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 396
ATTKLFQSKD LRR+VYL IKELSP A + VIIVTSSL KDM
Sbjct: 75 ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134
Query: 397 GKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNP 513
K D YR AIR LC I DST+L IERY+KQAIVDKNP
Sbjct: 135 SKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNP 173
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -1
Query: 546 QSGDQCGRSYCRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSH 367
QSGD + I + ++ +PLNS+ T C S NGG L H + R H
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHH 653
Query: 366 NDH 358
DH
Sbjct: 654 IDH 656
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 310 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 447
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 29.1 bits (62), Expect = 2.8
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +1
Query: 58 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 237
+SI +AR EED + + LD R V RK +L +++Y E+
Sbjct: 30 KSIGEARSKA-EEDRIISRELDHLK-----RRLADPDVPRRKMKELLLRLVYA-----EM 78
Query: 238 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDEY 414
+A+ K+ + + L+R YL + D VI+V +++ KD+ +
Sbjct: 79 LGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLV 138
Query: 415 RPAAIRALCSITDSTMLQAI 474
AA+ A C + + A+
Sbjct: 139 VCAALTAACRLIGEEAIPAV 158
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -2
Query: 560 GADRCKAETSAADPTAGFLSTIACFMYLSIACS---IVLSVMLHKARMAAGRYSSSLPVM 390
G+ R E A +P + A ++ LS+A + IV +L R+ YSS V+
Sbjct: 276 GSTRVANELGAGNPEG---ARSAVYVVLSVAVTEALIVCGTLLASRRLLGRAYSSEEEVI 332
Query: 389 SFVSEEVTM--ITSCAIGLNSLM 327
SFV+ V + IT GL +M
Sbjct: 333 SFVAMMVPLVCITVVTDGLQGVM 355
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 527 PHWSPLCICQHRTGFSASLDK 589
P PLC+C H SA+ DK
Sbjct: 158 PQQQPLCVCDHLQNLSANTDK 178
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 489 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 355
FHV +HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
>06_03_0536 + 21906583-21908037
Length = 484
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 506 RILQ*DLPHWSPLCICQHRTGFSASL 583
R+L D W P+C+ +HR+ S++L
Sbjct: 369 RLLSGDEREWRPVCMPEHRSNISSNL 394
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 275 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 129
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 312 VILPTLVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 360
>02_01_0412 - 3005600-3007759
Length = 719
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 79 GEPSLCSALLIFYCNL 32
G P LCS +L+ +CNL
Sbjct: 660 GNPKLCSPMLVHHCNL 675
>01_05_0604 - 23583244-23584989
Length = 581
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 275 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 129
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 380 VILPELVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,785
Number of Sequences: 37544
Number of extensions: 328533
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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