Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0085
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             29   2.2  
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   29   2.2  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 29   2.9  
SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)                      28   6.7  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  155 bits (377), Expect = 2e-38
 Identities = 87/149 (58%), Positives = 105/149 (70%), Gaps = 3/149 (2%)
 Frame = +1

Query: 76  RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 246
           RRD K+E+   SN FQNLDK  +LQEAR FN TP++ RKCIHILTKI             
Sbjct: 5   RRDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKI------------- 51

Query: 247 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAA 426
                      L+    ++LRR+VYL IKEL+ +A+DVIIVTSSLTKDMTGK+D +R +A
Sbjct: 52  -----------LYLINQLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASA 100

Query: 427 IRALCSITDSTMLQAIERYMKQAIVDKNP 513
           IRALC ITD+TMLQ IERY+KQA+VDKNP
Sbjct: 101 IRALCRITDNTMLQGIERYLKQAVVDKNP 129


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +1

Query: 91   EEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGE-ELTTQEATD-IF 264
            E  +   Q+LD        R+F++      KC+  L  +  LL + + ++   EA+  I 
Sbjct: 1229 EYKTEAMQSLDMILKYLTLRFFDTNTTVLIKCLEFLVALFTLLAESDYQMLEHEASSFIP 1288

Query: 265  FATTKLFQSKDVVLR--RLVYLCIKELSPMAQ 354
            +  TK+   KDVV +  R ++  I ++ P ++
Sbjct: 1289 YLVTKVGDPKDVVRKMIRSLFKLITKVYPASK 1320


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
 Frame = +1

Query: 196 LTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSP-------MAQ 354
           L K++ ++  GE+  T   T I F    L   +D  +++L+ L   E+ P       +  
Sbjct: 233 LKKVIQMILNGEKFPTLLMTVIKF----LMPLQDHTIKKLL-LIFWEIVPKTGADGKLLH 287

Query: 355 DVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAI 474
           ++I+V  +  KD+   ++  R + +R LC + ++ +L+ +
Sbjct: 288 EMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 327


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 456 TVCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHILCHRTQLFN 328
           TVCD     N  R +++   + +      HN H   HR   FN
Sbjct: 48  TVCDRHGQLNVSRVLIVFMVKKIATGFHQHNGHTSFHRCHAFN 90


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 227 PWFSK*SIFVKIWM-HFLGCTGVELKYLA-SCKRVVLSRFWKTLLSSSFPSRRAFIMLCS 54
           PW S   + V +W   F   T V +K +A  C +   SRF     SS    R AF++ C 
Sbjct: 23  PWRSS-KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLPCL 81

Query: 53  FNILL*FR 30
             + + +R
Sbjct: 82  LQVFVNYR 89


>SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)
          Length = 323

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 40  NKILKEQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYF--NSTPVHPRKCIH-ILTKIL 210
           NK+LK+ +  KA+   K     +F  L  ++  QEAR    +  P  P++     L+ ++
Sbjct: 230 NKLLKKNTFNKAKDRIKSRKEEIFGILSDSSKDQEARQVIEDILPASPKEGKRSFLSSVV 289

Query: 211 YLLNQGEE 234
              NQ EE
Sbjct: 290 KSFNQSEE 297


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/95 (24%), Positives = 45/95 (47%)
 Frame = +1

Query: 100  SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTK 279
            S V  ++  T+++ ++   N+T + P     I + I    +  + + T + + I FATT 
Sbjct: 822  SAVASSISATSVVVDSTTPNTTTLVPSISASIPSSITMNSSIEQSIDTLKPSSIAFATTP 881

Query: 280  LFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLT 384
            LFQ+  + +    Y   K +S +      + SSL+
Sbjct: 882  LFQTSIIPVTTQSY--EKTVSVIKSTTFEILSSLS 914


>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
 Frame = +3

Query: 39  Q*NIKRAEHNEGSPRWKRRR*QCLPKS**NNPFTRGKIFQLYTRASEKMHPYFDENTLFT 218
           Q  IK    NEG  RW  RR     K+  +N   R K  ++ T+          +N +  
Sbjct: 435 QTTIKETGPNEGRDRWISRRQTENEKTQRHNMEIRSKRVEVSTK----------DNAIEN 484

Query: 219 KPRRRINHAGGYGYIFCHYETVSVKGRCVTPLSLPMH*RVESYGTRC----DHCDFFTYE 386
            P +  NH G    +  H   +S  G C      P    V S  T+C    D  D+  Y+
Sbjct: 485 FPTQNTNH-GRSAKMIDHNANISSYGNCCQG-DTP---SVRSVSTQCEFSYDSQDYDDYD 539

Query: 387 GH 392
           GH
Sbjct: 540 GH 541


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 250 PPAWL--ILRLGLVNRVFSSKYGCIFSDARV*S*NILPL 140
           PP +   +++L  VN+V   KYGC FSDA   S   +PL
Sbjct: 24  PPCYFDQVIQLKPVNQVCYGKYGC-FSDASPFSRPFVPL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,310
Number of Sequences: 59808
Number of extensions: 403162
Number of successful extensions: 971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)