Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0082
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 30 0.063
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 1.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 2.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 3.1
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 24 5.5
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 24 5.5
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 5.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 23 9.6
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 9.6
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.063
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 102 QVIQFITTNRTVFKLQSVFELHKITI*CKIFT 7
+V F T TVFK++ VF LH++ + IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 264 YSLSR*SLPNDCCQSSLKNHHFLPFP 187
Y R +P D + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 180 RSVEMAENDDFLDSIDNNHLEGTNGSMNMTDNSLGGGD 293
+S + A N+D +DN L N + + +GGGD
Sbjct: 958 QSNKAARNNDLATILDNASLFPENDETDQLNTFVGGGD 995
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 213 LDSIDNNHLEGTNGSMNMTDNSLGGGDEA 299
L I ++ L+GT N T+ LG GDE+
Sbjct: 961 LQKITDHVLKGTTSLANHTNELLGLGDES 989
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 156 EIYNS*FRRSVEMAENDDFLDSIDNNHLEGTN 251
+ Y+S R E ++N++F + + N H TN
Sbjct: 75 QAYHSNIRYEQEESDNEEFENVVKNGHEASTN 106
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 5.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 5 SVNILHQIVILCNSNTDCNLKTVLFVVMNCIT*VGQRFHSGFGYREVK 148
SVN +L S+ D K CIT +G+R G+ VK
Sbjct: 185 SVNFSKDDSLLATSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVK 232
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 264 YSLSR*SLPNDCCQSSLKNHHFLPFPPSVEIMN 166
YS+ R ++ D C +++K + +L PP I N
Sbjct: 9 YSIPR-NVEKDTCAAAIKAYQYLISPPPSPIPN 40
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 177 RRSVEMAENDDFLDSIDNNHLEGTNGSMNMT 269
R +E+ E+D ++N++ TNG+ N++
Sbjct: 741 RDDIEVEEDDAEAQELENDNTNTTNGNDNVS 771
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 150 DLEIYNS*FRRSVEMAENDDFLDSI----DNNHLEGTNGSMNMTDNS 278
D+++ S +++ + + DDF + D++ LEG NG M +T S
Sbjct: 412 DVDVIRSRYQKLLS-GDADDFQANSNPFEDDDKLEGANGEMEVTFTS 457
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 80 QIGQFSNYSQYSNYIKSQFDARYL 9
Q+ Q NYS YSN S F YL
Sbjct: 8 QLFQLYNYSVYSNGTISNFTNCYL 31
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 225 QSSLKNHHFLPFPPSVE 175
QS+ KN+ FLPF VE
Sbjct: 6 QSNSKNYVFLPFSKRVE 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,501
Number of Sequences: 5004
Number of extensions: 21929
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -