Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0082
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    27   2.7  
07_01_0229 - 1672126-1673976,1674427-1675404                           26   4.7  

>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 195 AENDDFLDSIDNNHLEGTNGSMNMTDNSLGGGDE 296
           A  D+  D +  +H +G +GS+ + D++   GD+
Sbjct: 693 AAADEAADKLSADHFDGNDGSLALVDSAEVDGDD 726


>07_01_0229 - 1672126-1673976,1674427-1675404
          Length = 942

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 165 NS*FRRSVEMAENDDFLDSIDNNHLEGTNGSMNMTDNSLGG 287
           N  F   ++   ND+F D IDNNH+     S+N   +S  G
Sbjct: 141 NHLFAIELDTIRNDEFGD-IDNNHVGIDINSLNSVRSSYAG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,231
Number of Sequences: 37544
Number of extensions: 127298
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)