Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0082
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    26   5.8  
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    26   5.8  
AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical ...    26   5.8  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    25   7.6  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 LEIYNS*FRRSVEMAENDDFLDSIDNNHLE 242
           L+ Y S  R+S E +EN  FL+ I   ++E
Sbjct: 398 LDFYYSKTRKSFEFSENLKFLEKIGQKYIE 427


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 LEIYNS*FRRSVEMAENDDFLDSIDNNHLE 242
           L+ Y S  R+S E +EN  FL+ I   ++E
Sbjct: 398 LDFYYSKTRKSFEFSENLKFLEKIGQKYIE 427


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 222 SSLKNHHFLPFPPSVEIMNY 163
           SS+ +HH +P  PSV   NY
Sbjct: 499 SSISSHHLVPQSPSVPKTNY 518


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 137 GNQIHYEIVDLLR*YSS*QQIGQFSNYSQYSNYIKSQFDARYL 9
           G  I+  IVD++   +S QQ+G + N  + S +   +  A Y+
Sbjct: 785 GTSINKRIVDIVNWLTSEQQVGGYLNSFRESMWPNGELAAEYV 827


>AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical
           protein Y57G7A.5 protein.
          Length = 244

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 LEIYNS*FRRSVEMAENDDFLDSIDNNHLE 242
           + ++N   +   E+A+ D+FL+ ID N +E
Sbjct: 103 ITVHNRVKQDEKEVAKQDEFLNQIDRNEME 132


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
            line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 291  LRLRDYCQS--YSLSR*SL-PNDCCQSSLKNHHFLPFPPSV 178
            LR RD+  S  Y L + SL  N  C   ++ H FL + PS+
Sbjct: 923  LRNRDFSNSFFYFLHQFSLYMNPICAYRIRLHQFLSYKPSI 963


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,687,529
Number of Sequences: 27780
Number of extensions: 122502
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)