Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0076
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 29 0.45
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 3.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.2
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 5.6
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 26 5.6
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 7.4
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.4
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 7.4
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 9.7
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 231 SKSRKNDVSLTAPVAPVENSNPRMMNRL-PMPGMN--QDSPMTSPHAFNNKSASAMS 392
S +R+ + T P +PV SNP + L P+ G Q SP+ SP + ++ S S
Sbjct: 174 SHTRRRSSAGTDPFSPVSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHS 230
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 464 RPGCAAPGKPDAAPRHAASGPDIPAWKSSAISSL 565
RP +AP +P P AS P IP+ SSL
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL 171
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 380 CRFVVKRMWTGHR*ILIHSRHREAIHHTRIRIFNW 276
C F+ +W G + S H+ +IH ++I F W
Sbjct: 230 CSFLAFLLWNGSIVLGDKSHHQASIHLSQINYFLW 264
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 25 KRVCPILGKTWTTSHSLIHRIVKRSQAQSQKRKSPRPK 138
K++C GK+ T H+ + + + S S+K SP K
Sbjct: 199 KQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEK 236
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 150 NESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGM 329
+ SLS PS+S + S SS L S S + S ++ + +S+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 330 NQDSPMTSPHAFNNKSASAMS 392
+ S +SP + ++ +S+ S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSS 312
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.2
Identities = 26/106 (24%), Positives = 46/106 (43%)
Frame = +3
Query: 150 NESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGM 329
N S S G+ + + + VSSL + R + +S T+P + NS+ N G
Sbjct: 10 NASESISGNSAFNFPSAPVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTFPHGS 69
Query: 330 NQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGPGQTAAVDMSKAA 467
N+ + + SP +++N P LT + G P + + +A
Sbjct: 70 NKQASLESPVSYSNP-----IPSLTWLSLDGDSPDSLVSTPTAPSA 110
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 252 VSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTSPHAFN--NKSASAMSP 395
++LT P+ N+NP + N P N + M + AFN N + +SP
Sbjct: 392 MNLTRPI----NANPHLTNHSPNDLTNGEEEMDTTSAFNIENSHLTLLSP 437
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +3
Query: 180 SSSGMTHSVSSL-LGGIQSK-----SRKNDVSLTAPVAPVENSNPRMMNRL 314
SS GM+++ S+ LG +S S DVS T+PVAP + + R N +
Sbjct: 420 SSYGMSNNFGSVPLGRTESSPAWGTSGYYDVSSTSPVAPSDRNPSRQYNSI 470
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 174 HPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSN 293
H +SSG T S SL SKS +D L+ P ++S+
Sbjct: 293 HQNSSGRTDSFHSLNTETPSKSTVDDQILSTAAQPKKSSD 332
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 461 SRPGCAAPGKPDAAPRHAASGPDIPAWKSSAISSLWTI 574
+R A G PD P+H + G +P W S + +S++ +
Sbjct: 160 TRENYALYGTPDV-PQHISVGIALPKWISESENSIYIL 196
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 150 NESLSNDGHPSSSGMTHSVSSL-LGGIQSKSRKN 248
+E+L++DG PS + TH V L G++ R N
Sbjct: 258 SENLNSDGQPSYTSSTHGVLMLTANGMEVLLRPN 291
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 252 VSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAG 428
V +T P +N N P+ N + S +N S +++ HL+ SG+ G
Sbjct: 414 VVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSSSGLFDNG 472
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 482 VRHTLGGFTHVYRRGLSRSRTHHA 411
V H+LGG Y G ++TH A
Sbjct: 325 VAHSLGGLVQTYAVGYVHAKTHGA 348
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 150 NESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSN 293
+ S S G SSSG +H+++S + + S A + +S+
Sbjct: 545 SSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSS 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,324
Number of Sequences: 5004
Number of extensions: 44668
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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