Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0076
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 36 0.039
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2) 31 0.63
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 30 1.9
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 29 3.4
SB_11647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 29 4.5
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 29 4.5
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 29 4.5
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 4.5
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 7.8
SB_39531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 7.8
SB_14919| Best HMM Match : MAM (HMM E-Value=0) 28 7.8
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 35.5 bits (78), Expect = 0.039
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -1
Query: 536 RVYLARRRHDVGRHRAC-RVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKR 360
R+ RH + R A R RH L H R GL+R RT H RH R ++
Sbjct: 1318 RIRCGLARHTIRRGLARHRTRHGLA--RHTIRHGLTRHRTRHGLARHTIRHGLARHTIRH 1375
Query: 359 MWTGHR*ILIHSRHREAI--HHTR 294
HR L R R + H TR
Sbjct: 1376 GLAEHRHGLAWHRIRHGLPRHRTR 1399
Score = 34.3 bits (75), Expect = 0.090
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 536 RVYLARRR--HDVGRHRACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVK 363
R+ LAR R H + RHR +RH L H R GL+R R H RH R ++
Sbjct: 1214 RLGLARHRIRHGLARHR---IRHGLA--RHRTRHGLARHRIRHGLARHRIRHGLARHRIR 1268
Query: 362 RMWTGHR*ILIHSRHREAIHHTRIR 288
+L R R + RIR
Sbjct: 1269 HGLXXXXHVLARHRIRHGLARHRIR 1293
Score = 34.3 bits (75), Expect = 0.090
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Frame = -1
Query: 614 RGGIRAVSHAIAWKLSIMSLWR-RISRRVYLARRRHDVGRHRACRVRHTL-------GGF 459
R G+ H +A L R RI + R RH + RHR +RH L G
Sbjct: 1268 RHGLXXXXHVLARHRIRHGLARHRIRHGLARHRIRHGLARHR---IRHGLALHRIRCGLA 1324
Query: 458 THVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTGHR*ILIHSRHREAIHH 300
H RRGL+R RT H RH R + H + H R I H
Sbjct: 1325 RHTIRRGLARHRTRHGLARHTIRHGLTRHRTRHGLARH--TIRHGLARHTIRH 1375
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -1
Query: 521 RRRHDVGRHRACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTGHR 342
R RH + RHR RH L H R GL+R R RH R +++ GHR
Sbjct: 1388 RIRHGLPRHRT---RHGLA--RHRIRSGLARHRIRSGLAWHRTRHGLARHRIRQGLAGHR 1442
Query: 341 *ILIHSRHREAIHH 300
+ H R I H
Sbjct: 1443 --IRHGLARHTIRH 1454
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = -1
Query: 554 WRRISRRVYLARRRHDVGRH--RACRVRHTL--GGFTHVYRRGLSRSRTHHAALS*MRRH 387
W RI + R RH + RH R+ RH + G H R GL+R R RH
Sbjct: 1386 WHRIRHGLPRHRTRHGLARHRIRSGLARHRIRSGLAWHRTRHGLARHRIRQGLAGHRIRH 1445
Query: 386 SRCRFVVKRMWTGH 345
R ++ H
Sbjct: 1446 GLARHTIRHGLAEH 1459
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -1
Query: 521 RRRHDVGRH--RACRVRHTLGGFTHVYRRGLSRSRTHHAALS*MRRHSRCRFVVKRMWTG 348
R RH + RH R RHT+ +R GL+ R H RH R ++
Sbjct: 1354 RTRHGLARHTIRHGLARHTIRHGLAEHRHGLAWHRIRHGLPRHRTRHGLARHRIRSGLAR 1413
Query: 347 HR 342
HR
Sbjct: 1414 HR 1415
>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
Length = 228
Score = 31.5 bits (68), Expect = 0.63
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 551 RRISRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRG-LSRSR--THHAALS*MRRHSR 381
R ISRR Y++RRR+ + R R R + ++ RR +SR R + +S R SR
Sbjct: 157 RYISRRRYISRRRY-ISRRRYISRRRYISRRRYISRRRFISRRRYISRRRYISRRRYISR 215
Query: 380 CRFVVKRMWTGHR 342
RF+ +R G +
Sbjct: 216 RRFIARRRRFGKK 228
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/85 (29%), Positives = 37/85 (43%)
Frame = +3
Query: 174 HPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTS 353
HPS S S+ LLG +Q +++AP P +P N P +N +P TS
Sbjct: 6374 HPSHSTTEPSLDELLGRVQP-------AISAPTKPSLELSPITYNN---PSINPPTPPTS 6423
Query: 354 PHAFNNKSASAMSPHLTQSGMMGAG 428
+ S ++ +G MGAG
Sbjct: 6424 NQTDQSCSQGLRINNVILNGGMGAG 6448
>SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -1
Query: 551 RRISRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRG-LSRSR--THHAALS*MRRHSR 381
R ISRR Y++RRR+ + R R R + ++ RR +SR R + +S R SR
Sbjct: 45 RYISRRRYISRRRY-ISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISR 103
Query: 380 CRFVVKRMWTGHR 342
R++ +R + R
Sbjct: 104 RRYISRRRFIARR 116
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 153 ESLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVS--LTAPVAPVENSNPRMMNRLPMP 323
E ++ G PS+SG+T + +SL G Q+ + S LT+ P+ SNP ++ + P
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMNPSNPIHVSPVAAP 618
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 410 RHDGCGTGTNRGGRHE*SRPGCAAPGKPDAAPRHAASGPDIPAWKSS 550
R G G G G S+PG PG P P P IP W+++
Sbjct: 375 RPPGAGNGPG-GPPPPWSKPGGILPGPPPPGPPMLNMAPSIPPWQTT 420
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = -1
Query: 542 SRRVYLARRRHDVGRHRACRVRHTLGGFTHVYRRGLSRSR 423
SRR Y+ RRR R RA R R+T +T RRG +R R
Sbjct: 356 SRRRYIRRRRF-TSRRRATRRRYTRRRYTR--RRGSTRRR 392
>SB_11647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 478 RTRQARCRPTSCRLRARYTRLEILRHKLIMD 570
R+ A C T+C RA+YTR RH L +D
Sbjct: 9 RSIHALCHDTTCT-RAQYTRYATTRHALALD 38
>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
Length = 1643
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +3
Query: 267 PVAPVENSNP---RMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGPGQ 437
P+ + NP R +N +P QD P T P N +P T++ + + P +
Sbjct: 247 PITGQDRPNPGPERPINVPDVPITGQDRPNTGPDGLNTAPDLPKTPDNTRASALASPPAK 306
Query: 438 ---TAAVDM 455
AAVDM
Sbjct: 307 ECVLAAVDM 315
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 186 SGMTHSVSSLLGGIQSKSRKNDVSLTA-PVAPVENSNPRMMNRLPMPGMNQDSPMTS 353
+G ++ L I+ SR++ + + P+ P EN+N + R PG++ ++P S
Sbjct: 58 AGDLNTKKKSLDDIEQYSRRDCLEIKGVPLTPTENTNDVVKERPAKPGVHVNTPTAS 114
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 234 KSRKNDVSLTAPVAPVENSNPRMMNRLPM-PGMNQDSPMTSPHAFNNKSASAMSPHL 401
KS+K + + A +E P R + P +PMT+P + S MSP L
Sbjct: 1082 KSKKKPSAKSGSAAAIETPKPTKYQRTALEPIQEVPTPMTTPRNTRLRKDSVMSPTL 1138
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 204 VSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPM-TSPHAFNNKSA 380
VS L I +K R+ +P PVE + PR ++ P +N DS T+PHA NN
Sbjct: 550 VSLLNTKIDTKPRRAFTPAKSP-PPVETT-PRSIS--PSEPINSDSVTGTTPHAINNLGN 605
Query: 381 SAM 389
S M
Sbjct: 606 STM 608
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 431 GTNRGGRHE*SRPGCAAPGKPDAAPRHAASGPDIP 535
GT RGG P A P PD PR +G IP
Sbjct: 217 GTGRGGTVP-PTPATAPPPNPDGTPRPEINGKKIP 250
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 291 NPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGP 431
N R +N LP P QD+P T P + N + A+ +P S GA P
Sbjct: 421 NFRTLNELPPPEPYQDTPKTYP-SKNQQKANRGNPR-PASSSRGAPP 465
>SB_39531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 207 SSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQDSPMTSPHAF 365
+S+LG I +R+++ ++ + E SN + + P P +D P+ F
Sbjct: 25 TSILGSI---ARRDEERFSSEIRATEQSNTKKPTKCPAPNTEKDGPLIKHFRF 74
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 291 NPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGP 431
N R +N LP P QD+P T P + N + A+ +P S GA P
Sbjct: 333 NFRTLNELPPPEPYQDTPKTYP-SKNQQKANRGNPR-PASSSRGAPP 377
>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
Length = 1332
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -1
Query: 362 RMWTGHR*ILIHS--RHREAIHHTRIRI 285
R+W+G+R +L+ + +H+E +TR+RI
Sbjct: 870 RIWSGNRTVLVQNARKHQELYTNTRVRI 897
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,727
Number of Sequences: 59808
Number of extensions: 378495
Number of successful extensions: 1156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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