Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0076
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical p...    29   2.9  
U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical
           protein R05F9.1a protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
 Frame = +3

Query: 156 SLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQ 335
           S S+   PS+S  T   SSL+GG  S S     S +   +P  N+             N 
Sbjct: 23  SSSSQAGPSASTSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSSSGE-----SNP 77

Query: 336 DSPMTSPHAFNNKSASAMSPHLT-QSGMMGAGPGQTAAVDMSKAAQG 473
           D  +T+P        SA   H   Q  M   GP     +      QG
Sbjct: 78  DRSLTTPPLAPALKHSAKDGHYRGQRSMSLGGPAHEMLMSQLGGRQG 124


>U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical
           protein R05F9.1b protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
 Frame = +3

Query: 156 SLSNDGHPSSSGMTHSVSSLLGGIQSKSRKNDVSLTAPVAPVENSNPRMMNRLPMPGMNQ 335
           S S+   PS+S  T   SSL+GG  S S     S +   +P  N+             N 
Sbjct: 120 SSSSQAGPSASTSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSSSGE-----SNP 174

Query: 336 DSPMTSPHAFNNKSASAMSPHLT-QSGMMGAGPGQTAAVDMSKAAQG 473
           D  +T+P        SA   H   Q  M   GP     +      QG
Sbjct: 175 DRSLTTPPLAPALKHSAKDGHYRGQRSMSLGGPAHEMLMSQLGGRQG 221


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
 Frame = +3

Query: 162  SNDGHPSSSGMTHSVSSLLGGIQS-----KSRKNDVSLTAPVAPVENSNPRMMNRLPMPG 326
            SN G   S+     VSS   G  S      S  N  S T+    V           P  G
Sbjct: 852  SNTGSTGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQTNPNTG 911

Query: 327  MNQDSPMTSPHAFNNKSASAMSPHLTQSGMMGAGPGQTAAVDMSKAAQG 473
             +  S +T P AF++ SAS+ +  +  S    A PG + +     + QG
Sbjct: 912  -STGSTVTQPSAFSSTSASSSTQPIASS--TTANPGSSTSGPTIASTQG 957


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,132
Number of Sequences: 27780
Number of extensions: 273030
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)