Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0076
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 456 SCLPPRFVPVPHPSCRFELDE 394
           +CL P    + HP  R EL +
Sbjct: 321 ACLDPYVYAISHPKYRLELQK 341


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
 Frame = +3

Query: 282 ENSNPRMMNRLPMPGMNQDSPMTSPHAFNNKSASAMSPHLTQ----SGMMGAGPGQTAAV 449
           +   P +  +   P      P  SPH           P+ +Q     G  GA P Q  + 
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62

Query: 450 DMSKAAQG 473
            M   A G
Sbjct: 63  MMISPASG 70


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 237 SRKNDVSLTAPVAPVEN--SNPRMMNRLPMPGMNQDSPMTS 353
           S KN++S   PV PV++   +P  ++    P    ++P+T+
Sbjct: 17  SVKNEISTVEPVDPVKSLVCSPD-LSVFTSPACGSETPLTN 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,653
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)