Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0075
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.) 227 1e-59
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1) 83 2e-16
SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34) 75 6e-14
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92) 66 3e-11
SB_36946| Best HMM Match : ResIII (HMM E-Value=0.47) 63 3e-10
SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_56037| Best HMM Match : RepA_N (HMM E-Value=3.7) 45 7e-05
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 35 0.060
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 33 0.32
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_59370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51520| Best HMM Match : Flavoprotein (HMM E-Value=1.4) 29 4.0
SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2) 29 5.2
SB_2157| Best HMM Match : ig (HMM E-Value=9e-19) 29 5.2
SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08) 28 6.9
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 28 6.9
SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5) 28 6.9
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 28 6.9
SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2) 28 6.9
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82) 28 9.1
SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39) 28 9.1
SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_10610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 227 bits (554), Expect = 1e-59
Identities = 108/173 (62%), Positives = 129/173 (74%), Gaps = 2/173 (1%)
Frame = +1
Query: 226 FTGSAGTGKSFLLKRIVAALPPDVTMPTASTGVAACHIGGTTLHAFAGIGDGSGSIENLC 405
FTGSAGTGKSFLL+R++ LPP T TASTG AACH+GGTTLHAFAGIG G IE
Sbjct: 208 FTGSAGTGKSFLLRRLIGMLPPQGTFVTASTGAAACHVGGTTLHAFAGIGSGCADIEQCI 267
Query: 406 ERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKNDKPFGGIQLILCGDF 585
E A++ P + W+ CK LIIDEISMVD F+KL AVA+ IR++D+PFGGIQLIL GDF
Sbjct: 268 ELASR-PGRVKLWKTCKRLIIDEISMVDAELFDKLSAVAQSIRRDDRPFGGIQLILSGDF 326
Query: 586 LQLPPV--VDKNKQKRFCFQSHCWDKCIELCFELKQVHRQTDQEFISILNSIR 738
LQLPPV + + K K+FCFQ+ CW CI+ EL QV+RQ D F+SIL +IR
Sbjct: 327 LQLPPVSKIGEGKPKKFCFQAECWQDCIQTTIELTQVYRQQDPMFVSILQNIR 379
>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 96.7 bits (230), Expect = 2e-20
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Frame = +1
Query: 214 HDRVFTGSAGTGKSFLLKRIVAALPPDVTMP-TASTGVAACH----IGGTTLHAFAGIGD 378
H+ TG AGTGKSFL+ + + + T +TG+ + + T+H+FAGI
Sbjct: 617 HNTFLTGKAGTGKSFLIGGAINEISKTKRVAVTCTTGIGCQNFPQELQPMTIHSFAGIKC 676
Query: 379 GSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKNDKPFGG 558
G G++E+L ++ V ++W + L +DE+SM+ FE L+ +AR IR ND PFG
Sbjct: 677 GRGTLESLLGLVSQRDEVVRRWEQTDVLFVDEVSMLSAATFETLDFIARSIRHNDYPFGS 736
Query: 559 IQLILCGDFLQLPPV 603
+Q++ D+ QLPPV
Sbjct: 737 MQIVASRDYFQLPPV 751
>SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1)
Length = 514
Score = 83.4 bits (197), Expect = 2e-16
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Frame = +1
Query: 214 HDRVFTGSAGTGKSFLLKRIVAALPP--DVTMPTASTGVAACHIGGTT----LHAFAGIG 375
H+ TG AGTGKS L+K I L T S+G+A T +H+ G+G
Sbjct: 17 HNVFITGQAGTGKSHLVKAIFGKLKELGKTTKILCSSGIAGNVYQDLTTAWTVHSSYGLG 76
Query: 376 DGSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFE--KLEAVARHIRKNDKP 549
E L R PLV +K LI D++SM FE ++ + +N KP
Sbjct: 77 TADLPSEQLISRVASNPLVGEKVGHIDCLIWDKVSMSSQRIFEINQIHVTLSNSSENKKP 136
Query: 550 FGGIQLILCGDFLQLPPVVDKNKQKRFCFQSHCWDKCIELCFELKQVHR--QTDQEFISI 723
F G+Q++L G+FLQL PV F F S + FEL + R Q + EF++
Sbjct: 137 FNGMQVVLVGEFLQLKPVPSVWDDGHFMFYSAIFQHAFHHRFELLDIVRQDQAETEFVTC 196
Query: 724 LNSIR 738
L +R
Sbjct: 197 LKEVR 201
>SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)
Length = 211
Score = 74.9 bits (176), Expect = 6e-14
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +1
Query: 175 ETHSTQSAHRKPVHDRVFTGSAGTGKSFLLKRIVAALPPDVTMPTASTGVAACHIGGTTL 354
++HS + K + + G AGTGKS L+ I A L + TA+TG AA I G T+
Sbjct: 38 KSHSEDISANKKSLNFILLGVAGTGKSCLINGIRALLRSSCVV-TATTGKAAFQIKGVTI 96
Query: 355 HAFAGIGDGS-GSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHI 531
H+ + G G+ + CE +++ ++ ++++ID+ SM+ + ++ +
Sbjct: 97 HSLLKLPVGPRGNKDLTCECLSRLQ---NNLKEVRYIVIDDYSMLGQVALGWVDRRCKQA 153
Query: 532 RKN-DKPFGGIQLILCGDFLQLPPVVDK 612
+ D+PFGGI +IL GD QLPPV DK
Sbjct: 154 TGHLDQPFGGISIILTGDLGQLPPVEDK 181
>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
Length = 458
Score = 66.1 bits (154), Expect = 3e-11
Identities = 54/144 (37%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Frame = +1
Query: 220 RVF-TGSAGTGKSFL-----------LKRIVAALPPDV-TMPTASTGVAACHIGGTTLHA 360
R+F +G AG GKS + L IV P ++ + TA TG AA +I G TLHA
Sbjct: 316 RLFLSGGAGVGKSSVTNVLYEALIRYLNSIVGENPDEIKVLKTAPTGKAAFNIKGNTLHA 375
Query: 361 FAGIGDGSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKN 540
I G E ++ + K RK L IDE+ MV F L + I +
Sbjct: 376 AFKIPANKG-FEYCAFDNDRLNTIRAKLRKLHVLFIDEMVMVASGMFNFLNLRLQQIMGS 434
Query: 541 DKPFGGIQLILCGDFLQLPPVVDK 612
PFGGI LI GD QL PV DK
Sbjct: 435 KVPFGGISLIAIGDLFQLKPVFDK 458
>SB_36946| Best HMM Match : ResIII (HMM E-Value=0.47)
Length = 979
Score = 62.9 bits (146), Expect = 3e-10
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Frame = +1
Query: 229 TGSAGTGKSFLLKRIV-AALPPDVTMP-----------TASTGVAACHIGGTTLHAFAGI 372
+G AG GKS + K + AAL T P A TG AA +I G T+H+ + +
Sbjct: 740 SGGAGVGKSHVTKALYQAALKYYNTRPGVNFAETKILMLAPTGKAAYNIKGNTIHSASAV 799
Query: 373 GDGSGSIENLCER-ATKIPLVAQKWRKCKHLIIDEISMVDGIFFE-KLEAVARHIRKNDK 546
S++N + ++++ + + K + +DEISMV F + + I+ +
Sbjct: 800 -PACQSLKNYKKLDSSRLNTLRCQIGGLKLIFVDEISMVGNTMFNVQFNNRLKDIKGSSL 858
Query: 547 PFGGIQLILCGDFLQLPPVV------DKNKQKRFCFQSHCWDKCIELCFELKQVHRQTD- 705
PFGG+ ++ GD QL PV+ D + + + W + ++ FELK++ RQ +
Sbjct: 859 PFGGVSIVAIGDLFQLQPVMDGYIFKDMDNDEYGVLAPNVWQELFKM-FELKEIMRQRES 917
Query: 706 QEFISILNSIR 738
++F +LN +R
Sbjct: 918 KDFAELLNRLR 928
>SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 59.7 bits (138), Expect = 2e-09
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Frame = +1
Query: 229 TGSAGTGKSFLLKRIV-AALPPDVTMP-----------TASTGVAACHIGGTTLHAFAGI 372
+G AG GKS + K + AAL T P A TG AA +I G T+H+ +
Sbjct: 43 SGGAGVGKSHVTKALYQAALKYYNTRPGVNFAETKILMLAPTGKAAYNIKGNTIHSALAV 102
Query: 373 GDGSGSIENLCER-ATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKNDKP 549
S++N + ++++ + + K + +DEISM + F +L + I+ + P
Sbjct: 103 -PACQSLKNYKKLDSSRLNTLRCQIGGLKLIFVDEISMFNVQFNNRL----KDIKGSSLP 157
Query: 550 FGGIQLILCGDFLQLPPVV------DKNKQKRFCFQSHCWDKCIELCFELKQVHRQTD-Q 708
FGG+ ++ GD QL PV+ D + + + W + ++ FELK++ RQ + +
Sbjct: 158 FGGVSIVAIGDLFQLQPVMDCYIFKDMDNDEYGVLAPNVWQELFKM-FELKEIMRQRESK 216
Query: 709 EFISILNSIR 738
+F +LN +R
Sbjct: 217 DFAELLNRLR 226
>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 51.2 bits (117), Expect = 9e-07
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 ASTGVAACHIGGTTLHAFAGIGDGSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVD 489
A TG AA I G T+H+ + G ++L + + ++ ++++ID+ SM+
Sbjct: 58 ARTGKAAFQIKGVTIHSLLKLPVGLRGNKDLTGEC--LSRIQNNLKEVRYIVIDKYSMLS 115
Query: 490 GIFFEKLEAVARHIRKN-DKPFGGIQLILCGDFLQLPPVVDK 612
+ ++ + + +PFGGI +IL GD QLPPV DK
Sbjct: 116 QVALGWVDRRCKQATGHLGQPFGGISMILTGDLGQLPPVDDK 157
>SB_56037| Best HMM Match : RepA_N (HMM E-Value=3.7)
Length = 200
Score = 44.8 bits (101), Expect = 7e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +1
Query: 499 FEKLEAVARHIRKNDKPFGGIQLILCGDFLQLPPVVDK-NKQKRFCFQSHCWDKCIELCF 675
FE +E + R + + KPFG Q+IL GDF QLPPV ++ ++ ++ F S +
Sbjct: 9 FEIVERLVRTVCGSTKPFGEKQVILAGDFCQLPPVKNRFDESPQWLFHSPTYKSAFPHII 68
Query: 676 ELKQVHRQT---DQEFISILNSIR 738
L RQ+ +Q I +L+ +R
Sbjct: 69 GLNVHMRQSIDREQGLIKLLDELR 92
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 35.1 bits (77), Expect = 0.060
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 223 VFTGSAGTGKSFLLK---RIVAAL--PPDVTMPTASTGVAACHIGGTTLHAFAGIGDGSG 387
V +G+ GTGKS+++K R+V L D TG AA + G T H+F + G
Sbjct: 296 VVSGTGGTGKSYMIKCMQRLVRQLFGKNDAVQVVTPTGNAAFLVQGNTAHSFLSLPTGGR 355
Query: 388 SIENL 402
+ L
Sbjct: 356 ACNEL 360
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 18 VAPGAGFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQ 185
VAP P ++ P T R ++D SVT A + + L+T+ + +P+
Sbjct: 1708 VAPDTTVAPETTVVPETTMRPPKTDVSVTEATKAPVDQLKTKQPTISTAKTTAEPE 1763
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 18 VAPGAGFGPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQ 185
VAP P ++ P T ++D SVT A + + L+T+ + DP+
Sbjct: 1952 VAPDTTVAPETTVVPETTMPPPKTDVSVTEATKAPVDQLKTKQPTIATAKTTADPE 2007
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = -1
Query: 314 DAVGIVTSGGKAATILFNKKLFPVPAEPVKTR-SWTGLRCAL-C-----VLWVSSAGELL 156
+ VGIVTS T+ + K F +P +KT S L C L C V W+ G LL
Sbjct: 1401 NTVGIVTSSNTTVTVQYPPKFFKIPDNVIKTEGSSVNLTCQLECKPKCSVTWL-IGGSLL 1459
Query: 155 D 153
D
Sbjct: 1460 D 1460
>SB_59370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 373 LCQQKHEEWFHQCDKLRPQWMQWASLHQEVKLPQSFLIRNFF 248
L +H+ W HQCD+ + M ++ + + + F+I F
Sbjct: 45 LAHVQHQAWLHQCDESFDERMAFSDVRSAMPGDEGFIILKSF 86
>SB_51520| Best HMM Match : Flavoprotein (HMM E-Value=1.4)
Length = 215
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 223 VFTGSAGTGKSFLLK---RIV--AALPPDVTMPTASTGVAACHIGGTTLHAFAGIGDGSG 387
V +G+ GTGKS++++ R+V + D TG A + GTT F +
Sbjct: 92 VVSGTGGTGKSYMIRCIQRLVRQVFVKKDAVQVVTPTGNTAFLVQGTTASWFFSLPTCGR 151
Query: 388 SIENLCERATKIPLVAQKWRKCKHLII 468
S L A L+ + KCK+L +
Sbjct: 152 SCNELTVPAGN--LLRRLQDKCKNLAV 176
>SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 404 HKFSIDPLPSPMPAKA*RVVPPM*Q-AATPVDAVGIVTSGGKAATILFNK 258
HK ++D SP A V P M A P+ A+GI GG TIL +K
Sbjct: 370 HKVTVDTNKSP--ANLAEVFPEMVDDAVIPLAAIGIQYYGGPTVTILASK 417
>SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)
Length = 607
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 133 YGRARSKSSNSPADETHSTQSAHRKPVHDRVFTGSAGTGKSF 258
Y RAR+ ++ P+D T + P ++ F G G G F
Sbjct: 11 YHRARAHDTDQPSDPCQRTADQNPYPTYNSAFLGYPGFGYLF 52
>SB_2157| Best HMM Match : ig (HMM E-Value=9e-19)
Length = 603
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 96 SVTIAQRP-VIR---HLRTRPVEVQQLPRRRDPQHAECAPQARPRPGFHWL 236
+VT+++RP ++R HL T P+ Q+ R PQ C +P P WL
Sbjct: 153 NVTLSERPRILRKPLHLFTPPL---QILTRDQPQTFHCYADGQPAPRLAWL 200
>SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 562 QLILCGDFLQLPPVVDK 612
Q++ CGD+ Q+PP VDK
Sbjct: 169 QVVCCGDYGQVPPWVDK 185
>SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)
Length = 349
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 202 RKPVHDRVFTGSAGTGKSFLLKRIVAALPPDVTMP 306
R P+H + G++FL R + A P D+ P
Sbjct: 271 RTPLHYAALVSNVKVGRNFLRTRTIVAKPTDIAHP 305
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 48 RSISPAVTQRERRSDASV-TIAQRPVIRHLR-TRPVEVQQLPRRRDPQHAECAPQARPR 218
++ P Q R AS T+A +P + + TRP + + R + PQ + A Q+RPR
Sbjct: 881 KTSKPQHKQASRPRHASCKTMASKPQDQDKQSTRPGQKSRKTRTKKPQDKQAARQSRPR 939
>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -1
Query: 338 M*QAATPVDAVGIVTSGGKAATILFNKKLFPVPAEPVKTRSWTGLRCALCVLWVSSAGEL 159
M Q+ PVD ++ K LF K V AE K + V W G
Sbjct: 150 MTQSKVPVDLNAVLYRNEKTLERLFTKAGNLVKAEKYKELAKKRAHAMEMVFWNEGKGSW 209
Query: 158 LDFD 147
LDFD
Sbjct: 210 LDFD 213
>SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)
Length = 873
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 66 VTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHAECAPQARPRP 221
+T R R S+ I P++R R+ P P P ++ CA Q RP P
Sbjct: 789 MTGRRRGSEQDEVIKPNPLLR--RSLPKPDHPTP---SPSYSSCASQGRPNP 835
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 274 VAALPPDVTMPTASTGVAACHIGGTTLHAFAGIGDGSG 387
V+ P P++ GVA G LH AG GDG G
Sbjct: 1751 VSTTCPAKCQPSSVQGVATTATGRRRLHDSAGDGDGGG 1788
>SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 592 LPPVVDKNKQKRFCFQSHCWDKCIELCFELKQVHRQTDQ 708
L V+D N + F QS+ W KC L + ++ + + Q
Sbjct: 53 LSNVIDFNSKTFFSVQSNKWSKCRHLTYYIRAIGKSDGQ 91
>SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2)
Length = 523
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 562 QLILCGDFLQLPPVVDK 612
Q++ CGD+ Q+PP VDK
Sbjct: 188 QVVCCGDYGQVPPWVDK 204
>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
Length = 1642
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 191 CVLWVSSAGELLDFDRARP*VADHGPLGNSHRGIAPSLPLCYG-GRD*ATRTKTST 27
CV W+ +GEL D RA + G + PS+ CYG G+ A + TS+
Sbjct: 524 CVCWMWCSGELYDI-RAIVSPEEIGQVSKDQYIPEPSIKACYGRGKMQAKKNTTSS 578
>SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 39 GPRRSISPAVTQRERRSDASVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHAECAPQARPR 218
G R + P T + S T ++RP H R R + + P + P+H +P + P
Sbjct: 109 GARAATWPGATASSSSTSTS-TESKRPTSPHHRERDRDPENAPPSKSPRH---SPASTPT 164
Query: 219 PGFH 230
+H
Sbjct: 165 SSWH 168
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -2
Query: 334 DKLRPQWMQWAS-LH--QEVKLPQSFLIRNF 251
+ LRP+W +W LH +K+P+ F + NF
Sbjct: 905 ESLRPKWEKWRKYLHLLASLKIPRCFKLENF 935
>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 406 ERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKND 543
E K+PL + + I DEIS++DG+ F+ + + H ++D
Sbjct: 780 ENKVKLPLDLRSY----WAIRDEISLIDGLLFKAQKLIVPHALRDD 821
>SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)
Length = 252
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 53 NLSRRNTTGEKERCLCDYCPEARDPPPTDAPG 148
N ++NT G+ CD C AR+P D G
Sbjct: 88 NRDQKNTDGDPLGDACDNCINARNPTQADRDG 119
>SB_49252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 187 TQSAHRKPVHDRVFTGSAGTGKSFLLKRI 273
T S H + V G AG GKSF++ R+
Sbjct: 5 TSSGHTYKQYKVVLVGDAGVGKSFVIDRL 33
>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 646 CWDKCIELCFELKQVHRQTDQEFISILNSIR 738
CW+K I LC EL +++ +F+ + +R
Sbjct: 1 CWEKGIALCKELAELYENELYDFVRLSEILR 31
>SB_10610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +1
Query: 397 NLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKNDKPFGGIQLILC 576
NLCE + P + R + +IIDE V + L A+ ++ +P Q++ C
Sbjct: 199 NLCEDVSSRPGRIGEDRVGEVIIIDECCKVQT---KVLRAILGYLAT--RP---CQVVCC 250
Query: 577 GDFLQLPPVVDK 612
GD+ Q+PP DK
Sbjct: 251 GDYGQVPPWGDK 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,060,009
Number of Sequences: 59808
Number of extensions: 590644
Number of successful extensions: 2074
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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