Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0070
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 71 6e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 62 2e-10
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 60 9e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 52 3e-07
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 45 3e-05
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 44 6e-05
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 44 6e-05
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 44 6e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 40 0.001
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 39 0.002
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 36 0.022
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.052
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.052
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 34 0.052
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 34 0.069
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 34 0.069
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.48
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 30 1.1
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 30 1.1
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 1.5
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 1.5
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 1.5
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 2.0
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 2.0
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 3.4
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 28 3.4
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 4.5
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 27 6.0
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 27 6.0
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/94 (34%), Positives = 57/94 (60%)
Frame = +1
Query: 232 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN 411
+R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 412 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + + + +++PT IQ+ WPIAMSG+++
Sbjct: 137 LPGQIHE-LLYGKFQKPTVIQSISWPIAMSGRDI 169
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 62.1 bits (144), Expect = 2e-10
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +1
Query: 244 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
D + Q FNKNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+ + ++ Y++PTPIQA P A+SG+++
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDV 305
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 60.1 bits (139), Expect = 9e-10
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + +++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDV 341
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +1
Query: 232 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEA 408
+ + D V + F KNFY + + + EV+ YR + +TV G++ PI+ + +
Sbjct: 250 LAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQC 309
Query: 409 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
+ +K Y +PT IQAQ P MSG+++
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDV 344
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 45.2 bits (102), Expect = 3e-05
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
V +G +V PI F + + +++++ +KT GY PTP+Q P G++L
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDL 206
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDL 179
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDL 163
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 346 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDL 160
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 468
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 469 IQAQGWPIAMSGKNL 513
IQ QG P+A+SG+++
Sbjct: 216 IQIQGIPVALSGRDM 230
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEANFPD 420
++P ++ Y SP +++E Y N + V S V++ P+ FE+A +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 421 YVQQG-VKTMGYKEPTPIQAQGWPIAMSGKN 510
G ++ G+++P+PIQ+Q WP+ +SG++
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWPLLLSGQD 123
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 35.5 bits (78), Expect = 0.022
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
FE+ N + + GY +PTPIQ P+A++GK++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI 188
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + F EAN + +Q+ V GY + TPIQ P+ G ++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI 381
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + F EAN + +Q+ V GY + TPIQ P+ G ++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI 381
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + F EAN + +Q+ V GY + TPIQ P+ G ++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI 381
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 33.9 bits (74), Expect = 0.069
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + F +++ P +++ V+ GY TPIQ P+ GK++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 33.9 bits (74), Expect = 0.069
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
P + F +++ P +++ V+ GY TPIQ P+ GK++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 98 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 214
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
H +++ V + ++ G+ +PTPIQ + P M GK++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDV 64
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 379 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
H +++ V + ++ G+ +PTPIQ + P M GK++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDV 64
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
F EAN + +++ V GY + TPIQ P+ G ++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI 592
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
F EAN + +++ V GY + TPIQ P+ G ++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI 592
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 513
F EAN + +++ V GY + TPIQ P+ G ++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI 592
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -1
Query: 510 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 331
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 330 D 328
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -1
Query: 510 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 331
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 330 D 328
+
Sbjct: 86 N 86
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 150 RIIAEFVASSKFGTTVSTAIIPV 82
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 150 RIIAEFVASSKFGTTVSTAIIPV 82
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 501 RHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFDFI 322
R S+RP + +R+ F+ L L+H+ I + +M +L IIS ++
Sbjct: 224 RKSFRPKRTARQRQIFLQAFLLCLIHLSASILYV-----VMQFIEVPKFLTIIS---QYL 275
Query: 321 W*SFENCRMWIIKVF 277
W + C + I +F
Sbjct: 276 WQLAQGCPVIIYLIF 290
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 226 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 125
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 450
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 450
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 247 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI 390
+ + L+ FN+ Y+ PT L + +E+YR + + G+ NP+
Sbjct: 165 YSNALLKSFNE-IYNDKPTALIENLKTIEKYRKGNVLNQMGLRHRNPL 211
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
P+ V + ++ MG+ EPT IQ+ P A+
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAV 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,136,198
Number of Sequences: 27780
Number of extensions: 191870
Number of successful extensions: 633
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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