Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0069
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 67 2e-12
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 62 9e-11
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 29 0.57
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 1.3
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 27 2.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 3.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.1
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 5.3
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 7.1
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.3
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 9.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.3
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.3
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 66.9 bits (156), Expect = 2e-12
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +2
Query: 443 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILK 622
S + IG TPL++L+ L + G C + AK EF NPGGSVKDR AY + DAE+KG L
Sbjct: 15 SGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72
Query: 623 PGKSVI 640
G +++
Sbjct: 73 RGGTIV 78
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 61.7 bits (143), Expect = 9e-11
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Frame = +2
Query: 344 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILN----VIGNTPLVKLSKLPKDEG 511
D +G + A + L+ + +R + DI+N +IGNT +V++ L + G
Sbjct: 7 DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66
Query: 512 LKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKS 634
C++ AK EFLNPG S KDR+A +M AE+ G L P +S
Sbjct: 67 --CDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQS 105
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 74 VKFLSFKRKHSYYILPG*STLTHCELLQKNNLYRSI*F*FN*NCIFYQ 217
++ + +++K+ YYI S L HC N+ RS + F+ + +F+Q
Sbjct: 312 IRNVGYEKKNLYYISSAFSNLLHCRYFNCNDRLRSFYYRFS-SWLFHQ 358
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 464 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 556
G TP+ + +L K G K E++AK E N G
Sbjct: 14 GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +2
Query: 320 NSNMSNHVDAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLP 499
N + + H+ + T+ +++K L + H V + + + + D+L L+KL LP
Sbjct: 77 NRHAAAHIPQR--TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLP 133
Query: 500 KDE 508
+D+
Sbjct: 134 RDK 136
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 317 INSNMSNHVDAKNGTSNSARKFFTLKDMP 403
INSN+SN +D+ + ++SA F D+P
Sbjct: 157 INSNISNSLDSVSQHNSSADSLFVNGDVP 185
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 320 NSNMSNHVDAKNGTSNSARKFFT 388
N+N SN+ + NGT +A+ FFT
Sbjct: 321 NNNNSNNNNGNNGTVPNAKTFFT 343
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 485 LSKLPK--DEGLKCEMYAKCEFLNPGGSVKDRIAYR 586
LS++ K D GLK + AK + NP +++D + YR
Sbjct: 332 LSEMDKGSDVGLKNCIRAKISYENPNKAMRDPVIYR 367
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 326 NMSNHVDAKNGTSNSARKFFTLKDMPH 406
N SN++DA T S +T KD P+
Sbjct: 481 NTSNYMDATKDTEISYELLYTSKDSPY 507
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 323 CLSFLLLVFKIHNSLL 276
CL+ LLL+ K HNSL+
Sbjct: 405 CLNTLLLLLKSHNSLI 420
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 440 HSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVK 568
H D LN I T +SK K + ++YA L GG +K
Sbjct: 1231 HPDFLNAIYMTTRGGVSKAQKGLHVNEDIYAGMTALQRGGRIK 1273
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 481 HQWCVSDYIQNI*MYLL 431
H WCV I NI MYL+
Sbjct: 218 HLWCVQKRIGNIRMYLV 234
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 440 HSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVK 568
H D LN I T +SK K + ++YA L GG +K
Sbjct: 1165 HPDFLNTIFMTTRGGVSKAQKGLHVNEDIYAGMTALQRGGRIK 1207
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 302 VFKIHNSLLYQFTQLAFQFNFFILFNRRLDRKYSSN*TKIKSS 174
V+K ++ F QL + F + F R LD Y KIK +
Sbjct: 83 VYKKPRLDIHPFGQLHYDFTTLLNFQRYLDLGYGIEDVKIKEN 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,810
Number of Sequences: 5004
Number of extensions: 52653
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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