Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0069
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064) 62 4e-10
SB_18116| Best HMM Match : PALP (HMM E-Value=0) 62 4e-10
SB_32670| Best HMM Match : CIMR (HMM E-Value=0) 31 0.80
SB_45316| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_22425| Best HMM Match : PigN (HMM E-Value=0) 29 3.2
SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_13869| Best HMM Match : Antirestrict (HMM E-Value=4.5) 28 5.7
SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5) 27 9.9
SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 446 DILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKP 625
+IL IG+TPLV+++ + K GLKCE+ AKCEF N GGSVKDRI RM +AE++G LKP
Sbjct: 3 NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREGRLKP 62
Query: 626 GKSVI 640
G ++I
Sbjct: 63 GDTLI 67
>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
Length = 129
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/44 (61%), Positives = 34/44 (77%)
Frame = +2
Query: 509 GLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVI 640
GLKCE+ AKCEF+NP GS+KDRI RM DAE+ +KPG ++I
Sbjct: 7 GLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLI 50
>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
Length = 470
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/44 (61%), Positives = 34/44 (77%)
Frame = +2
Query: 509 GLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVI 640
GLKCE+ AKCEF+NP GS+KDRI RM DAE+ +KPG ++I
Sbjct: 7 GLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLI 50
>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
Length = 1441
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 355 WHIELCEKILYTKGHASHCKGTGSKSEGT 441
+HI +C +I T GH HC + GT
Sbjct: 196 FHINICREITPTTGHTQHCPAGSAACNGT 224
>SB_45316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 449 ILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIA 580
+ V+G P L+ + ++EG + E + EFL PGGS R A
Sbjct: 10 LFTVVGKAPAEPLAPITEEEG-RSE-HKIIEFLQPGGSTSSRAA 51
>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
Length = 913
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 442 MYLLISIQCPYNVRHVL*CKEFSRRV--RCAIFSIHMVRHVAVYRFYCLYLKFT 287
+Y +++ P+ + +L CK V CA ++H+VR V VY + + L T
Sbjct: 799 VYCFMTVFSPFLMGTLLLCKVVVPFVIVTCAFDAVHLVRQVPVYSLFLVVLVLT 852
>SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 440 VPSDFDPVPLQCEACPLV*RIFSQSSMCHF*HPHGSTCCCLSFLLLVFKI 291
V +FD +P C +V + S SSM F H H S C + FLL + ++
Sbjct: 157 VAREFDGIPSPLVVCDIVHLLSSASSMA-FRH-HFSLSCPMEFLLPLLQV 204
>SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 440 VPSDFDPVPLQCEACPLV*RIFSQSSMCHF*HPHGSTCCCLSFLLLVFKI 291
V +FD +P C +V + S SSM F H H S C + FLL + ++
Sbjct: 132 VAREFDGIPSLLVVCDIVHLLSSASSMA-FRH-HFSLSCPMEFLLPLLQV 179
>SB_13869| Best HMM Match : Antirestrict (HMM E-Value=4.5)
Length = 149
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 500 KDEGLKCEMYAKCEFLNPGGSVKDRIA 580
K G K +YA+ EFL PGGS R A
Sbjct: 15 KSNGGKA-IYARIEFLQPGGSTSSRAA 40
>SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5)
Length = 174
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 512 LKCEMYAKCEFLNPGGSVKDRIA 580
+KC ++ EFL PGGS R A
Sbjct: 43 VKCLLFRFIEFLQPGGSTSSRAA 65
>SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 419 LDRNQKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIA 580
+D K+ + L I T LVK ++ + K +Y EFL PGGS R A
Sbjct: 25 VDGIDKLDAVFLTAIWET-LVKNAETAANTS-KSSLYLGIEFLQPGGSASSRAA 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,850
Number of Sequences: 59808
Number of extensions: 378879
Number of successful extensions: 1417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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