Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0065
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...   142   6e-35
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.70 
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    28   1.6  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.8  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   6.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.7  

>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score =  142 bits (343), Expect = 6e-35
 Identities = 74/179 (41%), Positives = 109/179 (60%), Gaps = 20/179 (11%)
 Frame = +3

Query: 270 RVVSGIQPTGSLHVGNYFGAIRRCVRLQQQG-----NDLTLFIADLHSLTAQQNPEVLQN 434
           RVVSGIQPTG  H+GNY G++++ V+LQ++      +    F+ADLH+LT  Q+P   + 
Sbjct: 15  RVVSGIQPTGIPHIGNYLGSLKQWVQLQEEAARTPFSKCFFFVADLHALTVPQDPLKFRQ 74

Query: 435 NILELTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEK----- 599
             L++ A LLA GI+P++ST F QS V +H+EL WLLAC  +  +L  + Q+K K     
Sbjct: 75  ARLDMLAALLAIGINPQKSTLFFQSDVAQHSELAWLLACSTSMGQLNRMTQWKSKLHLHD 134

Query: 600 ----------SAKMKEVPIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQLVKT 746
                     +       +GL  YPVLQAAD+L+Y  TH+PVG DQ QH+++   + ++
Sbjct: 135 HDDLSFLDASATSSTRFNLGLFSYPVLQAADILLYGATHIPVGKDQSQHVELTRSIARS 193


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 311 NMQATSWLDSRDHTSWPFFNLRIFICRI 228
           N+  T W+D +     PFFN+  F+C +
Sbjct: 117 NLAITYWIDWQHKLKAPFFNMLSFVCEM 144


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 315 NYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEVLQNNILELTAY 458
           NY  A+R  +  +    +   F+A LH   A++ P++L   +  L +Y
Sbjct: 27  NYEAALRAILTGKASPVETASFLASLHLTKAEEVPDILMQTVQILKSY 74


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 MKILKLKNGHDVWSLESNQLVACMLGT-TLVQSDAVCACNS 357
           M+  K  +G   W L+SN++V    GT ++V  + VC   S
Sbjct: 643 MEYKKKGDGPGYWKLKSNEVVPDEAGTRSMVSPETVCLLES 683


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 127 LNT*FATLQTATRLNMSAELNSFKQLLDLIC 35
           L+T +A L   TRLN  A + S  Q + LIC
Sbjct: 64  LSTHYAKLSKKTRLNWDAHVVSSVQSIVLIC 94


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 51   SCLKLFSSADMLSLVAVCSVANHVLSY 131
            SC  +FS+A   S V VC   N ++SY
Sbjct: 1265 SCEIIFSNAYERSSVCVCREVNELISY 1291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,833
Number of Sequences: 5004
Number of extensions: 64150
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)