Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0065
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0669 - 31063722-31063856,31064001-31064090,31064275-310643...   133   2e-31
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    32   0.42 
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586...    31   0.97 
01_06_0966 - 33453963-33456692                                         29   3.9  
05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438...    29   5.2  
05_05_0317 + 24039343-24042717                                         29   5.2  
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888...    29   5.2  
06_01_0319 - 2292071-2292208,2292342-2292418,2292758-2293321,229...    28   6.9  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    28   9.1  

>01_06_0669 -
           31063722-31063856,31064001-31064090,31064275-31064356,
           31064448-31064494,31065074-31065130,31065368-31065433,
           31065537-31065558,31065641-31065753,31065903-31065974,
           31066839-31066961,31067052-31067141,31067504-31067545,
           31067791-31067878,31069167-31069286,31069382-31069434
          Length = 399

 Score =  133 bits (321), Expect = 2e-31
 Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
 Frame = +3

Query: 267 RRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEVLQNNILE 446
           +RVVSG+QPTG +H+GNY GAI+  V LQ     L  FI DLH++T       L      
Sbjct: 59  KRVVSGVQPTGLVHLGNYLGAIKNWVSLQDLYETL-FFIVDLHAITLPYEAPQLSKATRS 117

Query: 447 LTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKM--KEV 620
             A  LA GID  +++ FVQS V  H EL WLL+       L  + Q+KEKS K   + V
Sbjct: 118 TAAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLNRMIQFKEKSRKAGDENV 177

Query: 621 PIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQLVK 743
            + LL YPVL A+D+L+Y+   VPVG DQ QHL++  ++ +
Sbjct: 178 GVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAE 218


>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
            27159169-27159397,27159506-27159634,27159725-27159838,
            27160059-27160258,27160301-27160599,27160713-27160923,
            27161017-27161172,27161290-27161447,27161532-27161724,
            27162015-27162406,27162537-27162717,27162802-27163031,
            27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 513  VTRHAELCWLLACLATNARLAHLPQYKEKSAKMKEVPIGLLLYPVLQAADVLI 671
            + +HA L W    L   A +  LP+  E + +   +  GL+LY  LQ  ++LI
Sbjct: 1581 ICKHASLAWCRCILIKLASITPLPESMETTDQPAPLSSGLVLYIDLQPDELLI 1633


>09_06_0349 +
           22457820-22457987,22458202-22458246,22458597-22458650,
           22458742-22458846,22458932-22459138,22459217-22459302,
           22459423-22460330,22460566-22460624
          Length = 543

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 562 MPDWPIYPSIKRRVLR*RKCPLDYCFTQFYRQLT 663
           +P WP++   K ++ +  KCP ++C +  YR+ T
Sbjct: 12  LPGWPLFSPPKLQLQKCTKCPREFCSSINYRRHT 45


>01_06_0966 - 33453963-33456692
          Length = 909

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 214 WQLL*MRQMKILKLKNGHDVWSLESNQLVACMLGTTL 324
           WQLL M    ++ LKN +D  SL S++L  C+L  +L
Sbjct: 372 WQLLGMEMDVLMPLKNSYD--SLPSDKLRLCLLYCSL 406


>05_06_0244 +
           26643193-26643306,26643398-26643493,26643819-26643884,
           26643965-26644024,26644108-26644164,26644464-26644593,
           26645114-26645181,26645276-26645368,26645473-26645520,
           26645882-26646019,26646738-26646833,26647979-26648050,
           26648928-26648982,26649078-26649112,26649808-26649963
          Length = 427

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 228 NAANENSQVEEWPRRVVSGIQPTGSLHVGNY 320
           +A  +N Q+  W R VV+G  PTG  H   Y
Sbjct: 81  SARTDNLQLYHWVR-VVNGAPPTGDYHFAKY 110


>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 376  CLLLTYTP*QHSRTLKYYKTISWN*QHIY*QAVLIQNRAHSSFSPLLQDMQ--SCAGCLH 549
            C  LT+ P +  R+L   K++     HIY   +L  +  HS   P+L+D++  SC+  ++
Sbjct: 939  CAELTHLPAEGFRSLTALKSL-----HIYDCEMLAPSEQHSLLPPMLEDLRITSCSNLIN 993


>01_01_1119 +
           8882481-8882687,8882793-8882933,8883024-8883143,
           8883789-8883884,8884076-8884189
          Length = 225

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 450 TAYLLASGIDPEQSTFFVQSAVT-RHAELCWLLACLA 557
           TA+LLA G  P++S  F   AV+  HA     LACL+
Sbjct: 14  TAFLLARGAFPKRSYDFCNRAVSAAHAAAAVSLACLS 50


>06_01_0319 -
           2292071-2292208,2292342-2292418,2292758-2293321,
           2293978-2294104,2294207-2294323,2294440-2294547,
           2296567-2296804,2296915-2297122,2297199-2297247,
           2297384-2297728
          Length = 656

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 736 NCEATCRCCI*SAPTGTWVPR*INTSAACKTG*SNNPMGTSFILALFSL 590
           N   +C  C     TG++    +N SA CKT  SN  M ++ ++ L  L
Sbjct: 385 NMAGSCASCY--VTTGSFSRSAVNYSAGCKTAVSNIVMASAVLVTLLFL 431


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 415  FC--CAVKECKSAINSVKSLPCCC 350
            FC  C V +C+SA+ S    P CC
Sbjct: 1544 FCLTCLVDQCESALKSHDGFPLCC 1567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,635
Number of Sequences: 37544
Number of extensions: 397262
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)