Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0065
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-6|AAV34793.1|  360|Caenorhabditis elegans Tryptophanyl (w...   136   1e-32
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...   136   1e-32
AB096634-1|BAC76734.1|  360|Caenorhabditis elegans tryptophanyl-...   136   1e-32
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    34   0.093
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    34   0.093
AF089729-1|AAD04156.1|  458|Caenorhabditis elegans SMG-7 protein.      28   6.1  
AC024204-5|AAF36043.1|  458|Caenorhabditis elegans Suppressor wi...    28   6.1  
Z70209-2|CAA94145.2|  236|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U10402-6|AAV34793.1|  360|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform b protein.
          Length = 360

 Score =  136 bits (330), Expect = 1e-32
 Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 6/164 (3%)
 Frame = +3

Query: 264 PRRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGND---LTLFIADLHSLTAQQNP-EVLQ 431
           P    +GIQPTG  H+GN+FG+I     LQ   +    + L + D H+++    P   L+
Sbjct: 30  PTIYFTGIQPTGIPHLGNFFGSIEPWTELQNSVDKNILMMLSVVDQHAISLGPLPANELR 89

Query: 432 NNILELTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKM 611
            N  ++TA L+A G+DP ++  F QS V + A++ W+L  L T ++LA LPQYKEK  + 
Sbjct: 90  QNTHQMTASLIACGVDPNRTLLFRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERF 149

Query: 612 K--EVPIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQL 737
           K  ++P+GLL YP+LQAADVL ++ T VPVG DQ QHL +   L
Sbjct: 150 KKGDIPVGLLTYPLLQAADVLTFKATTVPVGEDQSQHLNLLGGL 193


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score =  136 bits (330), Expect = 1e-32
 Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 6/164 (3%)
 Frame = +3

Query: 264 PRRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGND---LTLFIADLHSLTAQQNP-EVLQ 431
           P    +GIQPTG  H+GN+FG+I     LQ   +    + L + D H+++    P   L+
Sbjct: 320 PTIYFTGIQPTGIPHLGNFFGSIEPWTELQNSVDKNILMMLSVVDQHAISLGPLPANELR 379

Query: 432 NNILELTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKM 611
            N  ++TA L+A G+DP ++  F QS V + A++ W+L  L T ++LA LPQYKEK  + 
Sbjct: 380 QNTHQMTASLIACGVDPNRTLLFRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERF 439

Query: 612 K--EVPIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQL 737
           K  ++P+GLL YP+LQAADVL ++ T VPVG DQ QHL +   L
Sbjct: 440 KKGDIPVGLLTYPLLQAADVLTFKATTVPVGEDQSQHLNLLGGL 483


>AB096634-1|BAC76734.1|  360|Caenorhabditis elegans
           tryptophanyl-tRNA synthetase (mitochondrial)protein.
          Length = 360

 Score =  136 bits (330), Expect = 1e-32
 Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 6/164 (3%)
 Frame = +3

Query: 264 PRRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGND---LTLFIADLHSLTAQQNP-EVLQ 431
           P    +GIQPTG  H+GN+FG+I     LQ   +    + L + D H+++    P   L+
Sbjct: 30  PTIYFTGIQPTGIPHLGNFFGSIEPWTELQNSVDKNILMMLSVVDQHAISLGPLPANELR 89

Query: 432 NNILELTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKM 611
            N  ++TA L+A G+DP ++  F QS V + A++ W+L  L T ++LA LPQYKEK  + 
Sbjct: 90  QNTHQMTASLIACGVDPNRTLLFRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERF 149

Query: 612 K--EVPIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQL 737
           K  ++P+GLL YP+LQAADVL ++ T VPVG DQ QHL +   L
Sbjct: 150 KKGDIPVGLLTYPLLQAADVLTFKATTVPVGEDQSQHLNLLGGL 193


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
 Frame = +3

Query: 282 GIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSL--TAQQNPEVLQNNIL--EL 449
           G   TG  HVG Y   +R+     Q G  +T+  ADLH+     + + E+L+  ++  E 
Sbjct: 52  GTATTGKPHVG-YLVPMRKIADFLQAGLKVTILFADLHAYLDNMKSSWELLKCRVIYYEN 110

Query: 450 TAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKMKEVPIG 629
               L   +D      + +          +    L  +A+++     K  +  +K+V   
Sbjct: 111 VIKALLQSLDVPIEQLYFKKGTEYQLSREYTDDVLRLSAQVSQRDALKAGAEVVKQVESP 170

Query: 630 LL---LYPVLQAAD 662
           LL   LYP+LQA D
Sbjct: 171 LLSGLLYPLLQALD 184


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
 Frame = +3

Query: 282 GIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSL--TAQQNPEVLQNNIL--EL 449
           G   TG  HVG Y   +R+     Q G  +T+  ADLH+     + + E+L+  ++  E 
Sbjct: 52  GTATTGKPHVG-YLVPMRKIADFLQAGLKVTILFADLHAYLDNMKSSWELLKCRVIYYEN 110

Query: 450 TAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKMKEVPIG 629
               L   +D      + +          +    L  +A+++     K  +  +K+V   
Sbjct: 111 VIKALLQSLDVPIEQLYFKKGTEYQLSREYTDDVLRLSAQVSQRDALKAGAEVVKQVESP 170

Query: 630 LL---LYPVLQAAD 662
           LL   LYP+LQA D
Sbjct: 171 LLSGLLYPLLQALD 184


>AF089729-1|AAD04156.1|  458|Caenorhabditis elegans SMG-7 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 483 EQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKMKEVPIGLLLYPVLQAAD 662
           E  T   Q AV  + +  W   C A  + L  L  YKE+S K+ +VP  L +  +L  A 
Sbjct: 271 EDGTELEQRAV-EYVKTIW---CTAYRSLLKTLDDYKEESKKLADVPHLLHILALLLCAP 326

Query: 663 VLI 671
            L+
Sbjct: 327 KLL 329


>AC024204-5|AAF36043.1|  458|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 7 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 483 EQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAKMKEVPIGLLLYPVLQAAD 662
           E  T   Q AV  + +  W   C A  + L  L  YKE+S K+ +VP  L +  +L  A 
Sbjct: 271 EDGTELEQRAV-EYVKTIW---CTAYRSLLKTLDDYKEESKKLADVPHLLHILALLLCAP 326

Query: 663 VLI 671
            L+
Sbjct: 327 KLL 329


>Z70209-2|CAA94145.2|  236|Caenorhabditis elegans Hypothetical
           protein K02D3.2 protein.
          Length = 236

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 353 LQAHTASDCTKVVPNMQATSW 291
           LQ + + DCTKV  N Q T W
Sbjct: 209 LQKYASKDCTKVSLNHQLTGW 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,696
Number of Sequences: 27780
Number of extensions: 368330
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)