Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0065
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   1.00 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   1.00 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   5.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 119 RIKLLLITQYFSKKVLKIQFFKSTI 193
           R+KLLL  Q+ SK++ + Q +K  I
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMI 57


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 119 RIKLLLITQYFSKKVLKIQFFKSTI 193
           R+KLLL  Q+ SK++ + Q +K  I
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMI 57


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 168 FNTFFEKYCVINNNLIR 118
           F T+F++YC+ +  LI+
Sbjct: 14  FGTYFQQYCLHHKILIK 30


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 491 HILRSVRCYKTCRAVLA 541
           H LR  RCY +  AVL+
Sbjct: 238 HKLRVTRCYSSDSAVLS 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,291
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)