Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0062
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 287 8e-79
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 230 1e-61
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 134 9e-33
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 97 2e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 54 3e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 49 6e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 5e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 46 7e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 42 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 41 1e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 39 8e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.003
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.006
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.006
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 35 0.010
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.017
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 34 0.017
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.029
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.16
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 29 0.48
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 1.1
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.9
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 27 3.4
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 4.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 287 bits (705), Expect = 8e-79
Identities = 133/172 (77%), Positives = 148/172 (86%)
Frame = +2
Query: 140 SSVFTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 319
S +F LFGK++MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTV
Sbjct: 6 SKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTV 65
Query: 320 WDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFA 499
WDVGGQDKIRPLWRHY+QNTQG+IFVVDS+DR+RI+EA EL ML EDELRDA++LVFA
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFA 125
Query: 500 NKQDMPNAMTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNEL 655
NKQD+PNAM AAE+T+ WYIQATCAT G GLYEGL+WLS L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNL 177
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 230 bits (563), Expect = 1e-61
Identities = 106/175 (60%), Positives = 128/175 (73%)
Frame = +2
Query: 140 SSVFTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 319
S F+RLF K+MRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F V
Sbjct: 10 SKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNV 69
Query: 320 WDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFA 499
WDVGGQDKIRPLWRHY+ T+GLIFVVDS+D RI+EA EL ++ + E+RD ++LV A
Sbjct: 70 WDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLA 129
Query: 500 NKQDMPNAMTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNELAKK 664
NKQD+P A++ A++T+ W +Q TCA G GL EGL WLS K
Sbjct: 130 NKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 134 bits (325), Expect = 9e-33
Identities = 63/164 (38%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Frame = +2
Query: 167 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 343
++++R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 344 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPNA 523
+R W++Y+++T+ +I+VVDS D R+ E N L +L E++L ILV ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 524 MTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNEL 655
+++ E++ W I + A G + + + WL+N+L
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/127 (37%), Positives = 74/127 (58%)
Frame = +2
Query: 170 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 349
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 350 PLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPNAMT 529
LWR Y+ G++++VD D +R++E++ EL +L +EL L+ NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 530 AAELTNA 550
EL A
Sbjct: 139 EDELKAA 145
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 53.6 bits (123), Expect = 3e-08
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Frame = +2
Query: 176 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 340
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 341 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQD 511
+ R + YY+ G++ + D +D+K +N +++ + ++ NK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCD 125
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 49.2 bits (112), Expect = 6e-07
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 343
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 344 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDM 514
R + YY+ G+I V D +D+ + L + + L+ NK DM
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 46.0 bits (104), Expect = 5e-06
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 343
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 344 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDM 514
R + YY+ G + V D + + L L+E + VI++ NK D+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE-LREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 45.6 bits (103), Expect = 7e-06
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Frame = +2
Query: 161 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 325
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 326 VGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANK 505
GQ++ R L Y +++ I V D ++ E + + ++ + D +I++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVIIVLVGNK 125
Query: 506 QDM 514
D+
Sbjct: 126 TDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 293 EYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDEL 472
+ K I +WD GQ+K R + R+YY+ G + V D +++ E + L+++
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 473 RDAVILVFANKQDMPN 520
V+L +K D+ N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 41.5 bits (93), Expect = 1e-04
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 340
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 341 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPN 520
+ + L YY+N I V D + + +A++ + L+ VI + NK D+
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKE-LQRQAPEGIVIALAGNKLDLAQ 134
Query: 521 AMTAAELTNA 550
A E +A
Sbjct: 135 ERRAVEKADA 144
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 41.1 bits (92), Expect = 1e-04
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 343
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 344 IRPLWRHYYQNTQGLIFVVDSSDR 415
+ L YY Q I + D + R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.7 bits (86), Expect = 8e-04
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 346
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 347 RPLWRHYYQNTQGLI--FVVDSSD 412
L Y ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 260 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAEN 439
I T G + ET + +DVGGQ R W H ++N L+F+V + + +N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 440 ELANMLKE 463
N ++E
Sbjct: 279 S-GNQMQE 285
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 164 GKKQMRILMVGLDAAGKTTILYKLKL 241
G +++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 266 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVV--DSSDRKRIAEAEN 439
T+G + + ++ ++DVGGQ R W + ++N +IF V + D+K A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 440 ELANMLKEDELRDAVI 487
E +++ L D++I
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 176 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 340
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 341 KIRPLWRHYYQNTQGLIFVVDSSDRKRI 424
+ + + ++F+ D S + +
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTL 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 35.1 bits (77), Expect = 0.010
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Frame = +2
Query: 176 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 340
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 341 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAEN---ELANMLKEDELRDAVILVFANKQD 511
+ + L +Y+ + V + ++ K EN E +DE I+V N+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV-GNQID 127
Query: 512 MPNAMTAAELTNA 550
+ A L A
Sbjct: 128 KDASKRAVSLHRA 140
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.017
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +2
Query: 164 GKKQ--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 322
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 323 DVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRK 418
D GQ++ + L +Y+ + V D ++ K
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSK 94
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.017
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 346
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 347 RPLWRHYYQNTQGLI--FVVDSSD 412
L Y +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.029
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 337
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 338 DKIRPL 355
D++RPL
Sbjct: 68 DRLRPL 73
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.16
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 340
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 341 KIRPLW-----RHYYQNTQGLIFVVDSSDRK 418
+ H ++N Q LI+V D R+
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.5 bits (63), Expect = 0.48
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +2
Query: 179 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEY----KNISFTVWDVGGQ- 337
++++VG GKT +L G +PT+ N T + Y K I +WD GQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 338 --DKIRPL 355
D++RPL
Sbjct: 76 EYDRLRPL 83
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 FTR-LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 298
FTR KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 28 FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 161 FGKKQMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 325
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 149 FTRLFGKKQMRILMVGLDAAGKTTILYKLKL 241
FT G+ + I+MVGL +GKTT KL L
Sbjct: 94 FTPKKGRPSV-IMMVGLQGSGKTTTCSKLAL 123
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 167 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 274
KKQ+ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,747
Number of Sequences: 5004
Number of extensions: 49806
Number of successful extensions: 172
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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