Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0060
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   0.83 
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   0.83 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   1.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.9  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 124 VVICEDD--KKANLLLDQSPRCLRKLITIKEVSPSTFQRAKSRGVEI 258
           V  C  D  KK    +  +PR LR+L T  E +  T   A    +EI
Sbjct: 66  VEYCTQDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIEI 112


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 124 VVICEDD--KKANLLLDQSPRCLRKLITIKEVSPSTFQRAKSRGVEI 258
           V  C  D  KK    +  +PR LR+L T  E +  T   A    +EI
Sbjct: 66  VEYCTQDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIEI 112


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 301 HPFVPPKPENLCTIC 345
           HPF+ P   + CT+C
Sbjct: 763 HPFLIPTGFDSCTVC 777


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 393 VSQHNAFRHPSRSXRITYCTKV 328
           V  HN  R P+R+  ++Y T +
Sbjct: 50  VIYHNNPRDPNRARSVSYSTVI 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,435
Number of Sequences: 336
Number of extensions: 1852
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)