Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0060
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   2.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   9.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   9.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 129 YYSHFSLVNNEGTSVRS 79
           Y+ HF  + N G S++S
Sbjct: 461 YFDHFESMLNNGVSIQS 477


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 129 YYSHFSLVNNEGTSVRS 79
           Y+ HF  + N G S++S
Sbjct: 461 YFDHFESMLNNGVSIQS 477


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 129 YYSHFSLVNNEGTSVRS 79
           Y+ HF  + N G S++S
Sbjct: 87  YFDHFESMLNNGVSIQS 103


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 319 SVGQKDGPFELPVF 278
           +V +  GPF LP+F
Sbjct: 49  TVSKVPGPFSLPIF 62


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 327 FRFRWDKRMVLL 292
           FRF WD  M+LL
Sbjct: 87  FRFYWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 327 FRFRWDKRMVLL 292
           FRF WD  M+LL
Sbjct: 87  FRFYWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 327 FRFRWDKRMVLL 292
           FRF WD  M+LL
Sbjct: 87  FRFYWDLCMLLL 98


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 11/53 (20%), Positives = 20/53 (37%)
 Frame = -1

Query: 206 LIVISFLRHRGDXXXXXXXXXXXSQITTAISVWLTMKAQAFAPSVSYNGTITI 48
           L+     RH G+             + + +S WL  +A A   S+     +T+
Sbjct: 204 LVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTM 256


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 97  FIVNQTEMAVVICEDDKKANLLLDQSPRCLRK 192
           FIV++    +  CE+ +K+N+ L    +  RK
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLKFEEQKRRK 127


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 250 VEILKFSDVEIQGAQKDHPFVPPKPENLCTICY 348
           +EI+KF ++   G +K   F      +L   CY
Sbjct: 235 MEIIKFVNIFFPGGKKTTFFESCGVADLIATCY 267


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 100 IVNQTEMAVVICEDDKKANLLLDQS 174
           I+N+T +AVV   +++  +LL++ S
Sbjct: 486 ILNKTVLAVVRQSEEEAVSLLINFS 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,205
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)