Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0055
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 93 4e-20
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 28 1.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 1.8
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 2.4
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 26 4.1
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 26 5.5
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 7.2
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 25 7.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.5
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 92.7 bits (220), Expect = 4e-20
Identities = 44/125 (35%), Positives = 72/125 (57%)
Frame = +1
Query: 1 LMRAYTLSVLTRLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLI 180
+MR L L+ G + + ++V W N+ GK S IRSF+D ++ G V+D++
Sbjct: 490 MMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVL 549
Query: 181 DAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTVFA 360
IK ++Y+LV G EE + NA+ AIS+AR+ G ++ LPEDI +P++++
Sbjct: 550 HGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIG 609
Query: 361 CLMAL 375
LMA+
Sbjct: 610 SLMAV 614
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 109 GKQSSIR-SFQDEVL-ADGKVVIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISM 276
GK+ ++ S D ++ A +++ + + +KPGSI +L+ G+E + N AI +
Sbjct: 192 GKRWGLKCSLADHIIFAILSILVFIAETVKPGSIRVNLIRKMGHEAKQQVNEYTAIPL 249
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 461 YNETEFYRQQAQAGPTYGLTGASMVGM*SSAIRQANTVMIILGFRSVMSSGSAY 300
+N+ + Q AQA PT GL G S S + A + G ++ ++G +
Sbjct: 111 FNQNQTQAQPAQAAPTGGLFGLSGQNQTQSQTQPAQANTSLFGQSNIGTTGGLF 164
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 220 LPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIM 348
LPG NEE+ L + I++ + + E + E+ P++I+
Sbjct: 508 LPGENEEDKLFDVTNEIAVENKSNAFYARINELVNEKAPELIL 550
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 152 ASTSSWKLLMEDCLPALCSLLLTH*TISF 66
+ S+WK+L+ L A+C +L+ +SF
Sbjct: 51 SGVSAWKVLLRQVLNAMCVVLILAAALSF 79
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 198 ARFDGIDQVNNDLPIG 151
A+ DG+DQ+NN L IG
Sbjct: 407 AKMDGVDQLNNILVIG 422
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +1
Query: 172 DLIDAIKPGSINY-DLVLP------GGNEEENLANAKYAISMARRCGGRVYA 306
DLI+ P S NY D LP +E E A Y I +A + GG +YA
Sbjct: 894 DLIEFTGPDSWNYKDHFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYA 945
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 163 VVIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISM 276
+++ + + +KPGSI +L+ G E + N A+ +
Sbjct: 223 ILVFIAETVKPGSIRVNLIRKMGYEAKQQVNEYTAVPL 260
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 242 SSSLPPGSTRS*LMEPGLMASIKSITTFPSASTSSWK 132
SS + +T + P ++ + IT FPS+ + +WK
Sbjct: 1628 SSGMSAMNTNTTSTTPVSLSELSEITLFPSSVSPTWK 1664
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 242 SSSLPPGSTRS*LMEPGLMASIKSITTFPSASTSSWK 132
SS + +T + P ++ + IT FPS+ + +WK
Sbjct: 1628 SSGMSAMNTNTTSTTPVSLSELSEITLFPSSVSPTWK 1664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,083
Number of Sequences: 5004
Number of extensions: 50227
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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