Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0055
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 100 1e-21
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 95 3e-20
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 65 4e-11
08_02_0893 + 22327485-22327671,22327756-22328627 28 5.6
05_01_0192 + 1394342-1396645 28 5.6
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803... 28 5.6
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 28 5.6
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 28 5.6
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 28 5.6
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 28 5.6
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 28 7.5
09_04_0377 + 17086775-17088310 27 9.9
04_04_1495 - 33984225-33985295,33986107-33986238 27 9.9
04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261 27 9.9
02_01_0658 + 4906979-4907296 27 9.9
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 100 bits (239), Expect = 1e-21
Identities = 49/128 (38%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Frame = +1
Query: 1 LMRAYTLSVLTRL-----ANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKV 165
LMR L +L RL + G I + +I++W N+K++++G+ S + SF+D+ L++G+
Sbjct: 501 LMRFNMLQLLNRLRSHSQGSQGKEITDADILKWANSKVKASGRTSQMESFKDKSLSNGRF 560
Query: 166 VIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMI 345
++L+ A++P +N+ +V G ++EE NA Y IS+AR+ G V+ LPEDI E KMI
Sbjct: 561 FLELLSAVQPRVVNWKVVTKGEDDEEKKLNATYTISVARKIGCSVFLLPEDIIEVNQKMI 620
Query: 346 MTVFACLM 369
+T+ A +M
Sbjct: 621 LTLTASIM 628
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = +1
Query: 64 EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEE 243
EK +++W+N+ L+ AG + ++ +F +V DG+ L+ A+ P + + L + E
Sbjct: 277 EKMLLRWMNHHLKKAGYKKTVSNFSTDV-KDGEAYAYLLKALAPEH-SPETTLETKDPSE 334
Query: 244 NLANAKYAISMARRCGGRVYALPEDITE 327
AK + A + + Y P+DITE
Sbjct: 335 R---AKLVLEQAEKLDCKRYLTPKDITE 359
Score = 31.5 bits (68), Expect = 0.61
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +1
Query: 64 EKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVL--PGGNE 237
E+ W+N S G S + + ++V G V+++++D + PGS+N+ L P
Sbjct: 403 ERSFRMWIN----SLGVDSYVNNVFEDV-RHGWVLLEVLDKVSPGSVNWKLASKPPIKLP 457
Query: 238 EENLANAKYAISMARRCGGRVYALP-EDITERKPKMIMTVFACLMALDYIPTMD 396
L N + + + + L DI + K+I+ + LM + + ++
Sbjct: 458 FRKLENCNQVVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQLMRFNMLQLLN 511
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 95.5 bits (227), Expect = 3e-20
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLA--NTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR L +L L + G I + +I+ W N K++ +GK S + SF+D L+ G ++
Sbjct: 528 LMRYNILQLLKNLRFHSNGKEITDNDILIWANKKVKDSGKHSRMESFKDRSLSSGIFFLN 587
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A++P +N+ LV G +EE NA Y IS+AR+ G ++ LPEDI E KM++T+
Sbjct: 588 LLGAVEPRVVNWSLVTKGEKDEEKQMNASYIISVARKLGCSIFLLPEDILEVNQKMMLTL 647
Query: 355 FACLM 369
A +M
Sbjct: 648 TASIM 652
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 64 EKEIVQWVNNKLQSAGKQSSIRS-FQDEVLADGKVVIDLIDAIKPGSINYDL 216
E+ W+N S G + I + F+D L +G V++++ID I PGS+N+ +
Sbjct: 430 ERSFRLWIN----SLGISTYINNVFED--LRNGWVLLEVIDKIAPGSVNWKM 475
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 65.3 bits (152), Expect = 4e-11
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLA--NTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR L +L L + I + +I+ W NNK D+ +A+G ++
Sbjct: 498 LMRTSILQLLKNLRTHSKDKEITDADILIWANNK--------------DKSIANGVFFLE 543
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A+ ++ +V G ++EE +NA Y IS+AR+ G ++ LPEDI E PKMI+ +
Sbjct: 544 LLHAVNHRHVDLSMVKKGEDDEEKKSNATYTISVARKLGCTLFMLPEDIMEVNPKMILVL 603
Query: 355 FACLM 369
A +M
Sbjct: 604 TASIM 608
>08_02_0893 + 22327485-22327671,22327756-22328627
Length = 352
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 381 VVQRHKAGEHRHDHLGLPFGDVLGQRVHAPA 289
+ + H+A HRH HL LP +L R++ A
Sbjct: 244 ICRAHQASRHRHRHLLLPCVAILHNRLNLEA 274
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.3 bits (60), Expect = 5.6
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = -3
Query: 401 GASMVGM*SSAIRQANTVMIILG---FRSVMSSGSAYTRPPQRRAIDIAYLAFAKFSSSL 231
G + VG SA Q +T M + F + SS S+ ++P R A + A SS+
Sbjct: 220 GDAFVGF--SASTQGSTEMHAVEWWTFSTPTSSSSSPSKPSPRMATPSSPPPEAPVSSAA 277
Query: 230 PP-GSTRS*LMEPGLMASIKSITTFPSASTSS 138
PP S L P + + + T P AST S
Sbjct: 278 PPPASLNPMLPSPPQLPGVSTTTPSPPASTVS 309
>03_02_0389 -
8036575-8036841,8037011-8037133,8037516-8037736,
8037788-8037812,8038344-8038445,8038556-8038951,
8039647-8039699,8039813-8039897,8040220-8040370,
8040457-8040464
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 162 LPIGQYFVLEAPNGGLL---ARALQLIVDPLNDFLLYD 58
L G Y VLE PN GL+ + IV PL D L +D
Sbjct: 12 LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHD 49
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 70 EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
++V +++++L G + +R +EV LA G+ ++ KPG+ Y LV P G
Sbjct: 302 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 357
>02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 70 EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
++V +++++L G + +R +EV LA G+ ++ KPG+ Y LV P G
Sbjct: 1260 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 1315
>02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 70 EIVQWVNNKLQSAGKQSSIRSFQDEV----LADGKVVIDLIDAIKPGSINYDLVLPGG 231
++V +++++L G + +R +EV LA G+ ++ KPG+ Y LV P G
Sbjct: 1243 DVVSYIHDRLSVEGAE--LRVICEEVVEFGLASGENTTVILVQFKPGAFQYQLVDPAG 1298
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 219 HQVVVDGARFDGIDQVNNDLPIG 151
H V++DG DG+ V ND P+G
Sbjct: 149 HDVLIDGMLKDGLWDVYNDFPMG 171
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 13 YTLSVLTRLANTGNPIIEKEI-VQWVNNKLQSAGKQSSIRSFQDEVLADG 159
+ ++V T + TGN + ++ V+ V+N L AGK+ S+ + Q L G
Sbjct: 66 FDINVFTEVHKTGNVSLMPDVSVELVSN-LMEAGKKPSVAAIQGLALGGG 114
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 42 QHWQPYHREGNRSVGQQ*AAERGQAILH*ELPGRSTGRW 158
+ W PYHR+ R V ++ A +R G G W
Sbjct: 67 RQWSPYHRDRGRDVEREWARDRDHPAPRRGGGGAGAGAW 105
>04_04_1495 - 33984225-33985295,33986107-33986238
Length = 400
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 121 SIRSFQDEVLADGKVVIDLIDAIKPGS 201
S++ F+D V ADG ID ++ ++ GS
Sbjct: 301 SLQEFRDVVRADGAFAIDRLELVRGGS 327
>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
Length = 326
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 408 LDGRVHGGYVVQRHKAGEHRHDH 340
+DG GGY Q AG H H H
Sbjct: 238 VDGYTGGGYYEQDSSAGYHHHHH 260
>02_01_0658 + 4906979-4907296
Length = 105
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 139 DEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEE 243
D +L DG V D + PG D+VLPGG + +
Sbjct: 74 DVILPDGGSV----DVVLPGGGGVDVVLPGGGDSD 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,830
Number of Sequences: 37544
Number of extensions: 381841
Number of successful extensions: 1188
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -