Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0055
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical ...   167   5e-42
AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical ...   133   1e-31
Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.      30   1.2  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin prot...    29   3.8  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   3.8  
U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical
           protein Y73B3B.1 protein.
          Length = 376

 Score =  167 bits (407), Expect = 5e-42
 Identities = 77/132 (58%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLANTGNPI-IEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
           LMRAYTLSVL +   +G+ +  +K+IV WVN KL+++GK +SIRSFQD  ++DGKVV+DL
Sbjct: 229 LMRAYTLSVLAQYTQSGDSLPTDKDIVAWVNEKLKNSGKSTSIRSFQDPAISDGKVVLDL 288

Query: 178 IDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTVF 357
           ID+IKP  I++ LV  G + E+ ++NAKYAI+  R+ G ++YALPEDI E KPKM++TVF
Sbjct: 289 IDSIKPNVIDHSLVKSGKSNEDKMSNAKYAITCGRKIGAKIYALPEDIVEVKPKMVLTVF 348

Query: 358 ACLMALDYIPTM 393
           ACLMA DY+P M
Sbjct: 349 ACLMARDYLPDM 360


>AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical
           protein Y104H12BR.1 protein.
          Length = 177

 Score =  133 bits (321), Expect = 1e-31
 Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLANTGNPI-IEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
           LMRAYTLSVL +   +G+ +  +K+IV WVN KL+++GK +SIRSFQD  ++DGKVV+DL
Sbjct: 61  LMRAYTLSVLAQCTQSGDSLPADKDIVAWVNEKLKNSGKSTSIRSFQDPAISDGKVVLDL 120

Query: 178 IDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITE 327
           IDAIKP  I++ LV  G + E+ ++NAKYAI+  R+ G ++YALPEDI E
Sbjct: 121 IDAIKPNVIDHSLVKSGKSNEDKMSNAKYAITCGRKIGAKIYALPEDIVE 170


>Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical
           protein F43G9.9 protein.
          Length = 192

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 70  EIVQWVNNKL-QSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSI 204
           EI+QWV N   QS   Q    +   +V  DG ++  L +++KPGS+
Sbjct: 34  EILQWVQNVTGQSFDTQGDADNLV-KVFQDGSLLCTLANSLKPGSV 78


>AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.
          Length = 192

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 70  EIVQWVNNKL-QSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSI 204
           EI+QWV N   QS   Q    +   +V  DG ++  L +++KPGS+
Sbjct: 34  EILQWVQNVTGQSFDTQGDADNLV-KVFQDGSLLCTLANSLKPGSV 78


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 158 PSASTSSWKLLMEDCLPALCSLL 90
           PS+S+SS+  L E CL  LC++L
Sbjct: 118 PSSSSSSYNTLFEICLSRLCNML 140


>AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin protein
           4 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 22  SVLTRLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGS 201
           ++L + A+  N +    +++W+ +  +      + R    E L DG+ +  L++AIK GS
Sbjct: 16  AILDKQASKFNDVEAGYLLEWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGS 75

Query: 202 I 204
           +
Sbjct: 76  V 76


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 362  ALWRWTT----YPPWTRPSSRKSDRPELVVDKIQFRCIDDVND 478
            ++W W      YP W  P++  S+ PEL+    +  C+ + +D
Sbjct: 2812 SIWEWNELKHGYPEWREPAAVSSEDPELI--SSESSCLSESDD 2852


>U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical
           protein K05G3.1 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 371 RWTTYPPWTRPSSRKSDRPELVVDKIQFRCID 466
           +W T+  WTRP  R S     V D I+   +D
Sbjct: 171 KWETFSDWTRPVLRPSQERYAVYDVIRLFDLD 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,498
Number of Sequences: 27780
Number of extensions: 292998
Number of successful extensions: 853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)