Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0055
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 98 4e-21
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 97 1e-20
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 93 2e-19
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 91 4e-19
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 91 8e-19
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel... 30 1.2
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00... 28 4.7
At2g17690.1 68415.m02048 F-box family protein contains F-box dom... 28 4.7
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 6.2
At5g25520.1 68418.m03036 transcription elongation factor-related... 28 6.2
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi... 28 6.2
At5g48520.1 68418.m05999 expressed protein similar to unknown pr... 27 8.2
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 27 8.2
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLANT--GNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR + L +L L + G + + EI+ W N K++ G++S I SF+D+ L+ G +D
Sbjct: 494 LMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIMGRKSQIESFKDKSLSSGLFFLD 553
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A++P +N++LV G +++E NA Y +S+AR+ G V+ LPEDI E KMI+ +
Sbjct: 554 LLWAVEPRVVNWNLVTKGESDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613
Query: 355 FACLM 369
A +M
Sbjct: 614 TASIM 618
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/125 (38%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLT--RLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR L +L RL + G I + +I++W N K+++ G ++ + SF+D+ L+DG ++
Sbjct: 495 LMRYNILQLLKNLRLHSNGKEITDADILEWANAKVRNNGCKTRMYSFRDKSLSDGVFFLE 554
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ +++P S+N+ LV G +EE NA Y IS+AR+ G ++ LPEDI E KM++T+
Sbjct: 555 LLSSVQPRSVNWSLVTNGVTDEEKKMNATYVISIARKLGCSIFLLPEDIIEVNQKMMLTL 614
Query: 355 FACLM 369
A +M
Sbjct: 615 TASIM 619
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLAN--TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR L +L L + G I E +I+ W N K++ +G+ S SF+D+ LA+G ++
Sbjct: 489 LMRYTMLQILNNLRSHCQGKDITEADILNWANRKVKKSGRTSQAVSFKDKNLANGIFFLE 548
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A++P +N+ LV G +EE NA Y IS+AR+ G ++ LPEDI E +M++ +
Sbjct: 549 LLSAVEPRVVNWSLVSKGETQEEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608
Query: 355 FACLM 369
A +M
Sbjct: 609 AASIM 613
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 91.5 bits (217), Expect = 4e-19
Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLANT--GNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR + L +L L + G + + +I+ W N K+++ G++ I SF+D+ L+ G ++
Sbjct: 493 LMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLN 552
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A++P +N++LV G ++E NA Y +S+AR+ G V+ LPEDI E KMI+ +
Sbjct: 553 LLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612
Query: 355 FACLM 369
A +M
Sbjct: 613 TASIM 617
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 90.6 bits (215), Expect = 8e-19
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 LMRAYTLSVLTRLAN--TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
LMR L +L L + G I + +I+ W N K++ G+ S SF+D+ L+ G ++
Sbjct: 493 LMRYTMLQLLRNLRSHSQGKEITDADILNWANRKVKRGGRTSQADSFRDKNLSSGMFFLE 552
Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
L+ A++P +N+ LV G EE+ NA Y IS+AR+ G ++ LPEDI E KM++ +
Sbjct: 553 LLSAVEPRVVNWSLVTNGETEEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612
Query: 355 FACLM 369
A +M
Sbjct: 613 AASIM 617
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 30/43 (69%)
Frame = +1
Query: 82 WVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINY 210
W+N+ L +A +++ F+D L +G V+++++D + PGS+N+
Sbjct: 401 WINS-LGTATYVNNV--FED--LRNGWVLLEVLDKVSPGSVNW 438
>At5g60520.1 68418.m07589 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 338
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 184 AIKPGSINYDLVLPGGNEEENLANAKYAISMAR-RCGGRVYALPEDITERKPKMIMTVFA 360
A S NY+++ P G+ +E + +AR C ++ P++ ERKPKM A
Sbjct: 30 AYDAASTNYNVLYPLGSGQERVQ------CLARGSCNQKILTCPKECPERKPKMNKKKKA 83
Query: 361 CLM 369
C +
Sbjct: 84 CFI 86
>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
F-box domain
Length = 338
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 365 LWRWTTYPPWTRPSSRKSDRPELVVDKIQFRCIDDVN 475
LWRW + + P R + E + DK +R IDDVN
Sbjct: 153 LWRWKSNDYKSSPRQRGFEIYEFISDK--WRVIDDVN 187
>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 109 GKQSSIRSFQDEVLADGKV-VIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARR 285
G + + F D VL +G +D + S YD++ G EN+ N R
Sbjct: 191 GIKKQVAQFSDFVLDEGLTYAVDTKGIMWWISSAYDIIRYGTKLHENITNGSCGEKRFVR 250
Query: 286 CGGRVYALPEDITE 327
C G +Y + I E
Sbjct: 251 CRGELYIVDRLIDE 264
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 46 TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
TG+ +++ + WV + G+ + +SF+D L K+ ++L
Sbjct: 328 TGDELLQGNGLSWVLEPVSDFGENETQKSFEDPELLASKIELEL 371
>At5g25520.1 68418.m03036 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 735
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 46 TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
TG+ +++ + WV + G+ + +SF+D L K+ ++L
Sbjct: 328 TGDELLQGNGLSWVLEPVSDFGENETQKSFEDPELLASKIELEL 371
>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
to Pig-o [Mus musculus] GI:8099973
Length = 897
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/83 (20%), Positives = 40/83 (48%)
Frame = -3
Query: 374 SAIRQANTVMIILGFRSVMSSGSAYTRPPQRRAIDIAYLAFAKFSSSLPPGSTRS*LMEP 195
S+ + +++M+ +G S +S ++ T + +D+A F +P + ++ P
Sbjct: 292 SSYEETDSLMLFIGLNSNISDYASATNNVAFQ-VDLAPTLALLFGVPIPKNNVG--VLVP 348
Query: 194 GLMASIKSITTFPSASTSSWKLL 126
G + S++ + +SW+LL
Sbjct: 349 GTLCSLRDFEQLRALELNSWQLL 371
>At5g48520.1 68418.m05999 expressed protein similar to unknown
protein (gb|AAB97010.1)
Length = 671
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/85 (20%), Positives = 37/85 (43%)
Frame = +1
Query: 88 NNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEENLANAKYA 267
NN+ G + SI+ +D LA ++L ++ YDL+ G + +
Sbjct: 90 NNQEAVFGAEESIKEVRDATLAHKAEALELQRQLRRLQTQYDLLT--GQSSALIQGRRAR 147
Query: 268 ISMARRCGGRVYALPEDITERKPKM 342
++ G++ A+ + ++ R +M
Sbjct: 148 VAATSAVSGQITAIEDSLSARNLQM 172
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 55 PIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVI 171
P+ + ++VQ+VN+K + + SS RS + G V+
Sbjct: 496 PVADYKVVQYVNDKTEDLSQSSSKRSCYSFCMCPGGQVV 534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,829
Number of Sequences: 28952
Number of extensions: 273754
Number of successful extensions: 801
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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