Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0054
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...   108   7e-25
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    29   0.93 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   1.2  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.8  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   3.8  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.0  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   6.6  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.7  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score =  108 bits (260), Expect = 7e-25
 Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
 Frame = +1

Query: 1   IQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQR- 177
           I N+K+LQ  F K G+DK+V  ++L + + QDN EF+QW K+F+D  Y G  YDA+A+R 
Sbjct: 59  INNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARRG 118

Query: 178 -EGLPMGHGGSXXXXXXXXXXXXXXXXXXXXXXQTIGKANTTVRSPPVNLSRISQSAKGD 354
             G       +                       T   AN    S   N + + + AK  
Sbjct: 119 NRGPANTRVMNSSAGATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTANTAAVLR-AKQA 177

Query: 355 SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQ---EMEEQHNAPIVQKILDI 525
            + +  L  Q+ E+  T+ GLE+ERDFYF KLR+IE++ Q            ++++I  I
Sbjct: 178 QQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENMLERIQAI 237

Query: 526 LYATEDGF-APPEE 564
           LY+TEDGF  PP++
Sbjct: 238 LYSTEDGFELPPDQ 251


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +1

Query: 340 SAKGDSKVVDEL-NHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE---QHNAPIV 507
           S +GD  VVDE  N  I   K         R F    ++D+E I QE+E+   +HN P+ 
Sbjct: 208 SKRGDILVVDEACNFAIQ--KGIQISRTTIRYFKHNNMKDLERILQELEDDFVKHNRPLT 265

Query: 508 QKIL 519
           ++ +
Sbjct: 266 RRFI 269


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 472 QEMEEQHNAPIVQKILDILYATEDGFAPPEEIDGD 576
           +E EE+H   + ++   I Y+    F P +E+DGD
Sbjct: 137 EESEEEHRPILRERTSRINYSVPLAFPPVDEMDGD 171


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 418 EKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATEDGFAPPEEIDGDN 579
           EK+ DF F  L   EV   ++      P +   L+ LY ++DGF   ++I GD+
Sbjct: 324 EKDNDFVFHDLVVKEVELPKISPLQALPPLP--LEKLYGSQDGFETAKKIVGDD 375


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 319 NLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEM 480
           NLS   +  K  S  ++E    +      +  +  ERDF   K++D E I Q++
Sbjct: 414 NLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDL 467


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/81 (19%), Positives = 39/81 (48%)
 Frame = +1

Query: 355 SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYA 534
           + ++D++  Q N +++T+  ++++ +    KL +   +C+ +          +I D +  
Sbjct: 112 TNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSEMCENLSTDEMR--FSEIADGIRK 169

Query: 535 TEDGFAPPEEIDGDNPHPPEE 597
               FAP +E+     HPP +
Sbjct: 170 GLTIFAPLKELTRVFRHPPPD 190


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 370 ELNHQINELKATVDGLEKERDFYFGKLRD 456
           EL  +I ELK ++  +  E DF+  +LRD
Sbjct: 585 ELAQEIRELKMSILMVRTEMDFHLQELRD 613


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 325 SRISQSAKGDSKVVDELNHQINELKATVDG---LEKERDFYFGKLRDIEVICQEMEEQ 489
           S I +    D+K+V+E    +  +  T  G   LE  +      L D+E + QEMEE+
Sbjct: 358 SSIEEPDNADNKIVEE-EPMLLPVPTTAQGQNVLEAVQYDGLDSLEDMEALIQEMEEE 414


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 364 VDELNHQINELKATVDGLEKERDFY-----FGKLRDIEVICQEMEEQHNAPIVQKIL 519
           +DEL +++  L  T     +E D Y       ++  + +  Q ++EQ NAP  Q+IL
Sbjct: 278 LDELLNKLKHLTLTHRWTLRETDLYVYRASLAEIDSMRIDGQFLDEQGNAPAGQRIL 334


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 355 SKVVDELNHQINELKATVDGL 417
           S+ +DELN+ I ELKA ++ +
Sbjct: 626 SESIDELNNNIEELKAQLNAI 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,489
Number of Sequences: 5004
Number of extensions: 58883
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)