Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0054
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    95   6e-20
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    77   1e-14
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    75   4e-14
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    31   0.66 
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like pr...    31   0.66 
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    31   0.66 
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    29   3.5  
U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    28   8.1  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    28   8.1  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
 Frame = +1

Query: 1   IQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQR- 177
           + N+K++Q  +K +GV+K++P+DKL+KG+FQDNFEFLQWFKK FDANY G  YD +  R 
Sbjct: 75  LSNWKLVQTTWKNLGVEKVIPVDKLIKGKFQDNFEFLQWFKKLFDANYDGHEYDPMQARN 134

Query: 178 -EGLPMGHG 201
            EGLP   G
Sbjct: 135 GEGLPTEGG 143



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 47/67 (70%)
 Frame = +1

Query: 364 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 543
           ++E+  Q+ E    +  LEKERDFYF KLR IEVICQ+ E   N   V ++L++LY TE+
Sbjct: 240 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVE-VNRVLEVLYETEE 298

Query: 544 GFAPPEE 564
           GFAPPE+
Sbjct: 299 GFAPPED 305


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 47/67 (70%)
 Frame = +1

Query: 364 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 543
           ++E+  Q+ E    +  LEKERDFYF KLR IEVICQ+ E   N   V ++L++LY TE+
Sbjct: 111 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVE-VNRVLEVLYETEE 169

Query: 544 GFAPPEE 564
           GFAPPE+
Sbjct: 170 GFAPPED 176


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
 Frame = +1

Query: 1   IQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANY--GGAAYDAVAQ 174
           + N+K+L   +K +G+DK V ++K+ K +FQDN EFLQWF KF++AN       YDAV  
Sbjct: 71  LNNWKVLTTTWKDLGIDKPVDVEKMKKAKFQDNMEFLQWFYKFYNANLTTEPEEYDAVGA 130

Query: 175 R--EGLP--MGHGGSXXXXXXXXXXXXXXXXXXXXXXQTIGKANTTVRSPPV-NLSRISQ 339
           R  E LP   G  GS                           A      P V N +R + 
Sbjct: 131 RFGEDLPALKGSTGSRPVAAPARPVAAAPPKPRPAAPAVAAPAVKASVPPTVRNGTRPAP 190

Query: 340 SAKGDSKVVDE------LNHQINELKA-------TVDGLEKERDFYFGKLRDIEVICQEM 480
           +    ++  D       L  +I + KA       T   +E ER++Y+  L+ +E +  E 
Sbjct: 191 ATSAGTRRADPSASEELLKQEIEKHKAASDEWETTAKEMETEREYYYSILQRVESLANEA 250

Query: 481 EEQHNAPI-VQKILDILYATEDGFAPPEEIDGDN 579
           EE  ++ + V  +  ILYA  +     +EI+ ++
Sbjct: 251 EESGSSTVDVAALKTILYAGNEDTEQVDEIENEH 284


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 274  QTIGKANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLR 453
            +T+ +  T +      L    +  + + + VD  N +I +L+  ++  E ERD    KL+
Sbjct: 1849 RTLRRMETKMAEMQQMLEEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLK 1908

Query: 454  DIEVICQEMEE 486
            D     +EM +
Sbjct: 1909 DERRRAEEMTD 1919


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 274  QTIGKANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLR 453
            +T+ +  T +      L    +  + + + VD  N +I +L+  ++  E ERD    KL+
Sbjct: 1849 RTLRRMETKMAEMQQMLEEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLK 1908

Query: 454  DIEVICQEMEE 486
            D     +EM +
Sbjct: 1909 DERRRAEEMTD 1919


>U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like
           protein family protein20 protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 204 APVPHGQTFSLRHCVICRTSIVGVKEFLEPLQKLKIILETTLHQFVN 64
           +PV    T S   C  C+++   V  FL P++K+++I +T L  FVN
Sbjct: 125 SPVVESGTLSNIICTNCQSA---VNAFLAPIKKVELITKTELTDFVN 168


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 274  QTIGKANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLR 453
            +T+ +  T +      L    +  + + + VD  N +I +L+  ++  E ERD    KL+
Sbjct: 1849 RTLRRMETKMAEMQQMLEEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLK 1908

Query: 454  DIEVICQEMEE 486
            D     +EM +
Sbjct: 1909 DERRRAEEMTD 1919


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +1

Query: 319 NLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKL-RDIEVICQ--EMEEQ 489
           +L ++    K   ++  +L  ++ E + T+DG+E E +  + +L  +I+ +C+  + ++Q
Sbjct: 671 DLEKVKSGEKELLQINSKLKEELEESQQTIDGIEIEAEQQYTELTSEIDELCEIVQRKDQ 730

Query: 490 HNAPIVQKILDIL 528
             A + +K+ +++
Sbjct: 731 ELAILKEKVTNVI 743


>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 483 FHLLTDHLYIPKLTEVEVSLFF*SIYCGFQFVYLMV*FIHNFRITLGTLT 334
           +H  TDH +IP L    +S+FF  +Y G   + +M   I +  + +G LT
Sbjct: 342 YHKETDHWFIPSLA---ISIFFLVVY-GIYHMLVMPRLITSLALIVGALT 387


>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 483 FHLLTDHLYIPKLTEVEVSLFF*SIYCGFQFVYLMV*FIHNFRITLGTLT 334
           +H  TDH +IP L    +S+FF  +Y G   + +M   I +  + +G LT
Sbjct: 342 YHKETDHWFIPSLA---ISIFFLVVY-GIYHMLVMPRLITSLALIVGALT 387


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 325 SRISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPI 504
           S    +  G  + V+ LNH ++E       L+   +  F  LRD+ + C  +E+++   I
Sbjct: 98  SAAKNNETGTDRAVELLNHYVDENNFVGGHLKLVPEIIFPLLRDVGLYC--LEKKNKPEI 155

Query: 505 VQKIL 519
            Q+I+
Sbjct: 156 GQRII 160


>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 352 DSKVVDELNHQINELKATVDGLEKERDFYFG 444
           +  V+D+L H++   + +   LE   DFY+G
Sbjct: 57  EQSVIDDLKHRLQNARISHSVLEDSDDFYYG 87


>U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical
           protein C06E7.2 protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 340 SAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 486
           S + + K   ELN  I ELK+  + ++ E+D    K R++ +  +  EE
Sbjct: 410 SKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGELKTREVNMTSENGEE 458


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 126 FLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLY 1
           F+E L+ LK +L++ LH   N Y+L H  +   S   F +LY
Sbjct: 21  FVE-LRSLKNLLKSILHNIENDYFLAHQKVRLYSSHNFVMLY 61


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 325  SRISQSAKGDSKVVDELNHQINELKATVDGLEKE 426
            S + +  KG  K++DE   + ++L A +DG +++
Sbjct: 1449 SALEKKQKGFDKIIDEWRKKTDDLAAELDGAQRD 1482


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 325  SRISQSAKGDSKVVDELNHQINELKATVDGLEKE 426
            S + +  KG  K++DE   + ++L A +DG +++
Sbjct: 1449 SALEKKQKGFDKIIDEWRKKTDDLAAELDGAQRD 1482


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 325  SRISQSAKGDSKVVDELNHQINELKATVDGLEKE 426
            S + +  KG  K++DE   + ++L A +DG +++
Sbjct: 1452 SALEKKQKGFDKIIDEWRKKTDDLAAELDGAQRD 1485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,003
Number of Sequences: 27780
Number of extensions: 341608
Number of successful extensions: 1079
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)