Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0054
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.75 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 520 DILYATEDGFAPPEEIDGDNPHPP 591
           +I  A E   A PEE DG  P PP
Sbjct: 112 EIQRALEWNAAHPEEDDGGQPRPP 135


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 294 ISFPDGLGSSCDFGDRGDG 238
           +SF D  GS   F + GDG
Sbjct: 378 VSFIDAAGSEVKFDEHGDG 396


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 294 ISFPDGLGSSCDFGDRGDG 238
           +SF D  GS   F + GDG
Sbjct: 468 VSFIDAAGSEVKFDEHGDG 486


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 317 LICHGLVKVPRVIRKLWM 370
           +IC GLV V  +I  +WM
Sbjct: 770 IICSGLVFVQILINGVWM 787


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 481 PSLDRSPLYPEAY 443
           PS+DRS ++ E+Y
Sbjct: 59  PSIDRSSIHEESY 71


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 490 HNAPIVQKILDILYATEDGFAP 555
           H   I   +  + Y T+DGF P
Sbjct: 908 HQGQIHLTVAVVQYKTQDGFGP 929


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,836
Number of Sequences: 438
Number of extensions: 4229
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)