Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0044
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   125   5e-30
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   121   9e-29
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    31   0.12 
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   1.5  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.5  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   4.6  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   6.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  125 bits (302), Expect = 5e-30
 Identities = 60/102 (58%), Positives = 74/102 (72%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
           E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  121 bits (292), Expect = 9e-29
 Identities = 58/102 (56%), Positives = 73/102 (71%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
           E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 692 IACT*HYEAWRQRFIYGTDTVKTNKLRRF*LIKDITNMSGTVILKLISDVIVVLGNEAIM 513
           I C   Y+ W     YG D      +RR   + D+T+ S  V++K + + I     EA+M
Sbjct: 10  IRCLCQYKLWNDLPSYGEDENVPQNIRRCYQLLDMTSRSFAVVIKELPNGI----REAVM 65

Query: 512 CFVII 498
            F ++
Sbjct: 66  IFYLV 70


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 403 QSSPECKPLHHFQVGAGIRPTGYLTITKDSIPIITKHIIASLPKT 537
           +S+P+  P    QV A I     + I +DSI  +  ++  SL KT
Sbjct: 361 KSNPQVSPTSERQVWAKIYRDSQINILQDSITYVKNYMEESLQKT 405


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +1

Query: 343 NQAATRCPYYSSLI*FCVVRQSSPECKPLHHFQVGAGIRPTGYLTITKDSIPIITKHIIA 522
           NQ +  CP Y+++        +SP+ K ++          T   +    S P+I    + 
Sbjct: 38  NQVSVSCPKYTTIY----TSGTSPDTKTIYPESTSTKSITT---STQSHSSPVIVVSTVG 90

Query: 523 SLPKTTITSLISFNITVP 576
           ++ +TTI+    +  T+P
Sbjct: 91  TVTETTISGSTEYTTTIP 108


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +1

Query: 343 NQAATRCPYYSSLI*FCVVRQSSPECKPLHHFQVGAGIRPTGYLTITKDSIPIITKHIIA 522
           NQ +  CP Y+++        +SP+ K ++          T   +    S P+I    + 
Sbjct: 38  NQVSVSCPKYTTIY----TSGTSPDTKTIYPESTSTKSITT---STQSHSSPVIVVSTVG 90

Query: 523 SLPKTTITSLISFNITVP 576
           ++ +TTI+    +  T+P
Sbjct: 91  TVTETTISGSTEYTTTIP 108


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 414 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 307
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 62  LSPKIHFVAFFADLVLACCALRTFTIFCSS 151
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 414 RRRLSYNTKSN-QRRIVRTPGGRLVY 340
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 456 PSHRIPDNHQRFHSDNHKTHYCF 524
           P H  P  H  FH++N+   YCF
Sbjct: 175 PPHHPP--HPHFHNNNYPPPYCF 195


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 466 GYLTITKDSIPIITKHIIASLPKTTITSLISFNITV 573
           G+ T TK+ +  +    I  +P    TSL+SF +++
Sbjct: 534 GFSTETKEDLIFLVSSQIRQMPYQNATSLLSFWLSI 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,657
Number of Sequences: 5004
Number of extensions: 55497
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)