Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0044
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 128 6e-30
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 128 6e-30
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 126 1e-29
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 30 1.6
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 4.8
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 28 6.3
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 6.3
05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266... 28 6.3
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 128 bits (308), Expect = 6e-30
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 128 bits (308), Expect = 6e-30
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 126 bits (305), Expect = 1e-29
Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 666 LAPAVHLRHRYRQDEQ-TEALLIDKGHYKHEWYSDIKTN 553
+A + +H++ DE TE L + KG K EW+ KTN
Sbjct: 239 IAETFYWKHKWNPDEVCTENLDVTKGPIKIEWFKGGKTN 277
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 402 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 247
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 445 QLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKAQEDPKVWSVQEQTPWYPAS 266
QL + A ++A V+ K KK +DT L S+ +++ P WS Q++ P+S
Sbjct: 1062 QLRDAAQPVVKAFQVLYWK---KKGYEDTLRSLRASLASRSKSQPASWSQQDKDSSTPSS 1118
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 101 LVLACCALRTFTIFCSSIRKALTMRCLTHL 190
LVLA +L+ F F SSIRK T R L+ L
Sbjct: 37 LVLASFSLQVFLHFFSSIRKGNTSRLLSSL 66
>05_01_0338 +
2665412-2665564,2665647-2665766,2666344-2666397,
2666583-2666660,2667608-2667652,2668327-2668434,
2668629-2668706,2669352-2669457,2669622-2669680,
2670465-2670564,2670932-2671011,2671132-2671188,
2671321-2671424,2671799-2671886,2671971-2672056,
2672140-2672185,2672246-2672317,2672541-2672601,
2672692-2672936
Length = 579
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 472 GIRWDGFRRQLENGAAAYIQATTVVQHKIKS-KKNSKDTGWPLGLSVCQKAQEDP 311
G+ + FR E Y+ TTVV H + +KN K TG+P L V + E+P
Sbjct: 263 GVAFQVFRSD-EAENIGYVIPTTVVSHFLNDYQKNGKYTGFPC-LGVLLQKLENP 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,311,539
Number of Sequences: 37544
Number of extensions: 379433
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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