Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0044
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          56   2e-08
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   1.6  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.6  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   29   4.9  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   4.9  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   6.4  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                28   6.4  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = -3

Query: 264 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 133
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 418 IQATTVVQHKIKSKKNSKDTGWPLGLSV 335
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 175 LLDAFMAEDTTIDTFHCFLTVAKTRTFSRSSWLDTTEFALALTTPWD-LLGLFDILI 342
           L+D  + + +     HCF+T+  T+T ++ S   T  F L   +PW   +G+ D L+
Sbjct: 542 LIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFL---SPWSAAVGMKDPLL 595


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 229 ENSETCLWWCPLP*MRQATHCQSLPN*RTKNCEGPQGTT 113
           ++ +  LW  P+P   Q + C+S P   T   E P  TT
Sbjct: 223 KHPDLMLWRKPVPKTDQQSECESSPGANTDRLESPARTT 261


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 411 RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 322
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 472  GIRWDGFRRQLENGAAAYIQATTVVQHKIKSKKNSKD 362
            GI+ + + ++LEN +A++ +A T +  KIK   + K+
Sbjct: 1218 GIK-EAYEQELENASASHKEALTALNQKIKQLSSDKE 1253


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 450 RNPSHRIPDNHQRFHSDNHKTHY 518
           +NP HR   +H   H  NH  H+
Sbjct: 251 KNPRHRYHHHHHHHHQHNHHQHH 273


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 450 RNPSHRIPDNHQRFHSDNHKTHYCFVT*DHDHITY*F*YHCTTHVCNVL 596
           +NP HR   +H   H  NH  H+      H H  +   +H   H+ N++
Sbjct: 39  KNPRHRY--HHHHHHQHNHHQHHHHHNHHHHHQQH---HHHHHHIINII 82


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 285 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 127
           ++G++  R  + S  C R   V +VY   +C +C +   V+   + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,525
Number of Sequences: 59808
Number of extensions: 448326
Number of successful extensions: 4769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4768
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)