Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0044
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089676-1|AAL90414.1|  168|Drosophila melanogaster RH48056p pro...   175   4e-44
AE014297-925|AAN13422.1|  168|Drosophila melanogaster CG9354-PB,...   175   4e-44
AE014297-924|AAF54369.1|  168|Drosophila melanogaster CG9354-PA,...   175   4e-44
AE014297-3917|AAN14070.1|  162|Drosophila melanogaster CG6090-PB...   175   6e-44
AE014297-3916|AAF56564.2|  162|Drosophila melanogaster CG6090-PA...   175   6e-44
AY071577-1|AAL49199.1|  162|Drosophila melanogaster RE63456p pro...   171   6e-43
AE014297-3919|AAF56566.1|  201|Drosophila melanogaster CG14551-P...    30   2.7  
BT004870-1|AAO45226.1|  618|Drosophila melanogaster LD38858p pro...    29   4.7  
AE014298-3092|AAN09531.1|  579|Drosophila melanogaster CG15445-P...    29   4.7  
AE014298-3091|AAF50848.2|  618|Drosophila melanogaster CG15445-P...    29   4.7  
AE014298-3090|AAN09530.2|  607|Drosophila melanogaster CG15445-P...    29   4.7  
AE014298-3089|AAN09529.2|  646|Drosophila melanogaster CG15445-P...    29   4.7  
AE014298-2946|AAF49027.2| 1736|Drosophila melanogaster CG15618-P...    29   4.7  

>AY089676-1|AAL90414.1|  168|Drosophila melanogaster RH48056p
           protein.
          Length = 168

 Score =  175 bits (427), Expect = 4e-44
 Identities = 80/104 (76%), Positives = 90/104 (86%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL+GI P+RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AE014297-925|AAN13422.1|  168|Drosophila melanogaster CG9354-PB,
           isoform B protein.
          Length = 168

 Score =  175 bits (427), Expect = 4e-44
 Identities = 80/104 (76%), Positives = 90/104 (86%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL+GI P+RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AE014297-924|AAF54369.1|  168|Drosophila melanogaster CG9354-PA,
           isoform A protein.
          Length = 168

 Score =  175 bits (427), Expect = 4e-44
 Identities = 80/104 (76%), Positives = 90/104 (86%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL+GI P+RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AE014297-3917|AAN14070.1|  162|Drosophila melanogaster CG6090-PB,
           isoform B protein.
          Length = 162

 Score =  175 bits (425), Expect = 6e-44
 Identities = 80/104 (76%), Positives = 89/104 (85%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL GI P+RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITPSRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AE014297-3916|AAF56564.2|  162|Drosophila melanogaster CG6090-PA,
           isoform A protein.
          Length = 162

 Score =  175 bits (425), Expect = 6e-44
 Identities = 80/104 (76%), Positives = 89/104 (85%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL GI P+RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITPSRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AY071577-1|AAL49199.1|  162|Drosophila melanogaster RE63456p
           protein.
          Length = 162

 Score =  171 bits (417), Expect = 6e-43
 Identities = 79/104 (75%), Positives = 88/104 (84%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRLT RRRLSYNT+SN+RRIVRTPGGRLVYQYVKK   +PRCGQCK KL GI  +RP+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITASRPS 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 124
           ER R+  R KTV R YGGVLCH C+++RIVRAFLIEEQKIVK L
Sbjct: 61  ERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKIVKAL 104


>AE014297-3919|AAF56566.1|  201|Drosophila melanogaster CG14551-PA
           protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 366 RTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLC-YRKKTVKRVYGGVLCH 190
           + P G L+Y  + KP  + RC  C       + A P +R+     RK   ++    V  H
Sbjct: 115 KQPPGPLIYGMLPKPAVVGRCPTCSGNPERTEVAIPEQRTPWAPERKSWNRKTQEQVKPH 174

Query: 189 KC 184
           +C
Sbjct: 175 RC 176


>BT004870-1|AAO45226.1|  618|Drosophila melanogaster LD38858p
           protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 451 RRQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 323
           R+QL+N    Y  +   ++ ++K + NSKD  W    SVC  A
Sbjct: 395 RQQLKNARMKYKASERAMERRLK-RSNSKDCTWVNPRSVCSLA 436


>AE014298-3092|AAN09531.1|  579|Drosophila melanogaster CG15445-PC,
           isoform C protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 451 RRQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 323
           R+QL+N    Y  +   ++ ++K + NSKD  W    SVC  A
Sbjct: 395 RQQLKNARMKYKASERAMERRLK-RSNSKDCTWVNPRSVCSLA 436


>AE014298-3091|AAF50848.2|  618|Drosophila melanogaster CG15445-PA,
           isoform A protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 451 RRQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 323
           R+QL+N    Y  +   ++ ++K + NSKD  W    SVC  A
Sbjct: 395 RQQLKNARMKYKASERAMERRLK-RSNSKDCTWVNPRSVCSLA 436


>AE014298-3090|AAN09530.2|  607|Drosophila melanogaster CG15445-PB,
           isoform B protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 451 RRQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 323
           R+QL+N    Y  +   ++ ++K + NSKD  W    SVC  A
Sbjct: 423 RQQLKNARMKYKASERAMERRLK-RSNSKDCTWVNPRSVCSLA 464


>AE014298-3089|AAN09529.2|  646|Drosophila melanogaster CG15445-PD,
           isoform D protein.
          Length = 646

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 451 RRQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 323
           R+QL+N    Y  +   ++ ++K + NSKD  W    SVC  A
Sbjct: 423 RQQLKNARMKYKASERAMERRLK-RSNSKDCTWVNPRSVCSLA 464


>AE014298-2946|AAF49027.2| 1736|Drosophila melanogaster CG15618-PA
           protein.
          Length = 1736

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 304 TPWDLLGLFDILINQAATRCPYYSSLI*FCVVRQSSPECKPLHHFQVGA--GIRPTGYLT 477
           TPWD+  +  +LI   A     + + +  C    S P+ +     Q+ A   +RP  Y  
Sbjct: 251 TPWDVRSIAALLIGHLARFSGTFKAYVEDC----SRPKAEQDVPIQMAALLVLRPVDYTE 306

Query: 478 ITKDSIPIITKHIIASLPKTTITSLISF 561
               ++ I+ + +  S  K+T+T+L+ F
Sbjct: 307 NATLALAILKRIVAVSELKSTVTNLLVF 334


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,655,267
Number of Sequences: 53049
Number of extensions: 637731
Number of successful extensions: 1579
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)