Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0044
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...   121   4e-28
Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    32   0.46 
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    32   0.46 
Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    29   2.4  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    29   2.4  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    29   2.4  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   9.9  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score =  121 bits (292), Expect = 4e-28
 Identities = 59/101 (58%), Positives = 72/101 (71%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 255 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 133
               L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 61  ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 489 IFGDCQVSGGTDSGANLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 322
           +F +CQ++G      N  MV+R+  RR + Y T+ N  +      GR+V+  +K P
Sbjct: 192 LFYECQLAGKILDCCNDLMVRRVVMRRGICYQTRKNVNQSEADDIGRIVFS-LKAP 246


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = -3

Query: 471  VSGGTDSGANLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCK 292
            V G  D  A +  +Q  + +  +  + +  ++ ++R   G L YQ++ K  + PR  +  
Sbjct: 2311 VPGTYDPSAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNG-LDYQFLLKGHEDPRQDERV 2369

Query: 291  SKLRGIQPARPAERSRLCYRKKTVKR 214
             +L G+     A  S  C R  T++R
Sbjct: 2370 MQLFGLVNTLLANNSETCRRNLTIQR 2395


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = -3

Query: 471  VSGGTDSGANLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCK 292
            V G  D  A +  +Q  + +  +  + +  ++ ++R   G L YQ++ K  + PR  +  
Sbjct: 2314 VPGTYDPSAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNG-LDYQFLLKGHEDPRQDERV 2372

Query: 291  SKLRGIQPARPAERSRLCYRKKTVKR 214
             +L G+     A  S  C R  T++R
Sbjct: 2373 MQLFGLVNTLLANNSETCRRNLTIQR 2398


>Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical
           protein F26E4.5 protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
 Frame = -3

Query: 696 YYSVHIALRSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEW---YSDIKTNK*CDRGLR* 526
           YY       +++  V   H+ R       + +     + EW   +  I   K    G   
Sbjct: 148 YYLKEFCFENISDLVRYHHQTRASVYKSGIKLFSWVVREEWQLYHEQINLGKKLGNG--- 204

Query: 525 RSNNVFCDYRN-GIF-GDCQVSGGTDSGANLKMVQRLTFRRRLSYNTKSNQRRIVRTPG 355
               VF    + GIF  D +V+  T  G+ +   +R+TF R  +   K N + +VR  G
Sbjct: 205 EFGEVFQGVLSVGIFTNDVEVAVKTMKGSKVTADERITFLREANLMLKLNHKYVVRLYG 263


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 546 CDRGLR*RSNNVFCDYRNGIFGDCQVSGGTDSG 448
           C  GL+   + V CDY + +  +CQ + G +SG
Sbjct: 337 CPAGLKFSESTVRCDYESNV-SECQETSGEESG 368


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 546 CDRGLR*RSNNVFCDYRNGIFGDCQVSGGTDSG 448
           C  GL+   + V CDY + +  +CQ + G +SG
Sbjct: 337 CPAGLKFSESTVRCDYESNV-SECQETSGEESG 368


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 447 ANLKMVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGI 274
           AN  +V +LT +++ +    TK+  +  V  P      + +KKP K+PR     +  +G 
Sbjct: 63  ANKPVVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGP 122

Query: 273 QPARPAERSR 244
           + A PA + +
Sbjct: 123 KAAAPAAKKK 132


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 471 VSGGTDSGANLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQC 295
           VS  T    +L +V   + RRR S  ++S++R +VR+   G +  +   +     R G+ 
Sbjct: 61  VSTHTAKSPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRS 120

Query: 294 KSKLRGIQPARPAERSR 244
           +S  R    +R   RSR
Sbjct: 121 RSSKRSRSRSRSRSRSR 137


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 214 TFHCFLTVAKTRTFSRSSW 270
           TFHC LTV +    +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,998
Number of Sequences: 27780
Number of extensions: 322663
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)